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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Marine Viruses from Arctic Ocean (SRP000129)
Anticodon = GCT
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.14962 (2 seq.)
>ENV08000214
ABLY01028681
viral fraction from Arctic Ocean
7
99
+
Ser
GCT
[ENA]
¡û
>SRA1000233
SRR001037.191235
Marine Viruses from Arctic Ocean (SRP000129)
7
99
+
Ser
GCT
[SRA]
Identical group No.20682 (7 seq.)
>W1712105824
NISK01000003
Alphaproteobacteria
Sphingopyxis bauzanensis [NISK]
225033
225124
+
Ser
GCT
[ENA]
¡û
>WENV181167046
OEIU01007176
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
4475
4566
+
Ser
GCT
[ENA]
¢þ
>ENV08000219
ABLY01034329
viral fraction from Arctic Ocean
7
98
+
Ser
GCT
[ENA]
¡û
>ENV08000222
ABLY01037914
viral fraction from Arctic Ocean
10
101
+
Ser
GCT
[ENA]
¡û
>WENV170974062
MTKY01053490
[MTKY] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
4322
4413
+
Ser
GCT
[ENA]
¢þ
>SRA1000173
SRR001036.262453
Marine Viruses from Arctic Ocean (SRP000129)
10
101
+
Ser
GCT
[SRA]
>SRA1000210
SRR001037.50221
Marine Viruses from Arctic Ocean (SRP000129)
7
98
+
Ser
GCT
[SRA]
Identical group No.31690 (7 seq.)
>WENV181166884
OEIU01003797
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
6032
6122
+
Ser
GCT
[ENA]
¢þ
>ENV08000189
ABLY01004374
viral fraction from Arctic Ocean
106
16
-
Ser
GCT
[ENA]
¡û
>WENV183746577
POYE01021425
[POYE] biofilm metagenome; steel pipe from biofilm reactor
338
248
-
Ser
GCT
[ENA]
¢þ
>SRA1000205
SRR001036.354125
Marine Viruses from Arctic Ocean (SRP000129)
106
16
-
Ser
GCT
[SRA]
>W1911810739
QYZQ01000001
Alphaproteobacteria
Mesorhizobium sp. DCY119 [QYZQ]
3547159
3547249
+
Ser
GCT
[ENA]
¡û
>W1710565448
FORF01000010
Alphaproteobacteria
Aquamicrobium aerolatum DSM 21857 [FORF]
4399
4309
-
Ser
GCT
[ENA]
¡û
>W1710578131
FPBI01000008
Alphaproteobacteria
Mesorhizobium sp. YR577 [FPBI]
240877
240787
-
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK