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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Marine Viruses from Arctic Ocean (SRP000129)
Anticodon = GGA
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.36213 (8 seq.)
>W1712105841
NISK01000005
Alphaproteobacteria
Sphingopyxis bauzanensis [NISK]
108145
108055
-
Ser
GGA
[ENA]
¡û
>WENV180208815
OBAJ01048864
[OBAJ] marine metagenome; Coastal water
107
17
-
Ser
GGA
[ENA]
¢þ
>ENV08000248
ABLY01091511
viral fraction from Arctic Ocean
110
20
-
Ser
GGA
[ENA]
¡û
>WENV170555600
CXWL01001321
[CXWL] groundwater metagenome; biofilm material
18321
18411
+
Ser
GGA
[ENA]
¢þ
>WENV170596758
FUIF01012330
[FUIF] marine metagenome; marine
842
752
-
Ser
GGA
[ENA]
¢þ
>WENV170974945
MTKY01081665
[MTKY] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
1171
1261
+
Ser
GGA
[ENA]
¢þ
>SRA1000187
SRR001036.299297
Marine Viruses from Arctic Ocean (SRP000129)
110
20
-
Ser
GGA
[SRA]
>C151044379
CP009122
Alphaproteobacteria
Sphingopyxis fribergensis Kp5.2 [CP009122]
2268676
2268766
+
Ser
GGA
[Ensembl]
¡û
Identical group No.37983 (2 seq.)
>ENV08000259
ABLY01133988
viral fraction from Arctic Ocean
17
107
+
Ser
GGA
[ENA]
¡û
>SRA1000175
SRR001036.269298
Marine Viruses from Arctic Ocean (SRP000129)
17
107
+
Ser
GGA
[SRA]
Identical group No.37985 (1 seq.)
>SRA1000182
SRR001036.287392
Marine Viruses from Arctic Ocean (SRP000129)
87
-1
-
Ser
GGA
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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