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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Marine Viruses from Arctic Ocean (SRP000129)
Anticodon = GGT
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.656201 (49 seq.)
>W1710864892
LMGF01000005
Alphaproteobacteria
Sphingopyxis sp. Root1497 [LMGF]
1569915
1569841
-
Thr
GGT
[ENA]
¡û
>W1710865001
LMGI01000001
Alphaproteobacteria
Sphingopyxis sp. Root154 [LMGI]
88944
88870
-
Thr
GGT
[ENA]
¡û
>W1710867405
LMIG01000003
Alphaproteobacteria
Sphingopyxis sp. Root214 [LMIG]
1130868
1130942
+
Thr
GGT
[ENA]
¡û
>W1710912523
LNRR01000006
Alphaproteobacteria
Sphingopyxis sp. H005 [LNRR]
27589
27663
+
Thr
GGT
[ENA]
¡û
>W1710912569
LNRS01000005
Alphaproteobacteria
Sphingopyxis sp. H012 [LNRS]
27587
27661
+
Thr
GGT
[ENA]
¡û
>W1710912627
LNRT01000012
Alphaproteobacteria
Sphingopyxis sp. H038 [LNRT]
156401
156327
-
Thr
GGT
[ENA]
¡û
>W1710912659
LNRU01000006
Alphaproteobacteria
Sphingopyxis sp. H053 [LNRU]
57968
58042
+
Thr
GGT
[ENA]
¡û
>W1710912705
LNRV01000012
Alphaproteobacteria
Sphingopyxis sp. H077 [LNRV]
138365
138291
-
Thr
GGT
[ENA]
¡û
>W1710912733
LNRW01000004
Alphaproteobacteria
Sphingopyxis sp. H080 [LNRW]
27585
27659
+
Thr
GGT
[ENA]
¡û
>W1710912781
LNRX01000003
Alphaproteobacteria
Sphingopyxis sp. H085 [LNRX]
295526
295452
-
Thr
GGT
[ENA]
¡û
>W1710912819
LNRY01000003
Alphaproteobacteria
Sphingopyxis sp. H093 [LNRY]
27579
27653
+
Thr
GGT
[ENA]
¡û
>W1710912883
LNRZ01000004
Alphaproteobacteria
Sphingopyxis sp. H050 [LNRZ]
73823
73749
-
Thr
GGT
[ENA]
¡û
>W1710912910
LNSA01000001
Alphaproteobacteria
Sphingopyxis sp. H115 [LNSA]
337455
337381
-
Thr
GGT
[ENA]
¡û
>W1710912958
LNSB01000009
Alphaproteobacteria
Sphingopyxis sp. HIX [LNSB]
47196
47270
+
Thr
GGT
[ENA]
¡û
>W1710913015
LNSC01000025
Alphaproteobacteria
Sphingopyxis sp. HXXIV [LNSC]
12823
12749
-
Thr
GGT
[ENA]
¡û
>W1711259762
LYVN01000007
Alphaproteobacteria
Sphingopyxis sp. KK2 [LYVN]
46452
46378
-
Thr
GGT
[ENA]
¡û
>C171094580
CP019449
Alphaproteobacteria
Sphingopyxis sp. QXT-31 [CP019449]
1175257
1175183
-
Thr
GGT
-
¡û
>C171128413
LT598653
Alphaproteobacteria
uncultured Sphingopyxis sp. [LT598653]
1698731
1698805
+
Thr
GGT
-
¡û
>C019751
CP000356
Alphaproteobacteria
Sphingopyxis alaskensis RB2256 [CP000356]
1686704
1686630
-
Thr
GGT
[Ensembl]
¡û
>WENV180041125
LLBZ010048383
[LLBZ] soil metagenome; soil from tomato rhizosphere
3435
3361
-
Thr
GGT
[ENA]
¢þ
>ENV08000291
ABLY01533313
viral fraction from Arctic Ocean
79
5
-
Thr
GGT
[ENA]
¡û
>WENV170596757
FUIF01012330
[FUIF] marine metagenome; marine
2489
2563
+
Thr
GGT
[ENA]
¢þ
>W09102962
AAIP01000010
Alphaproteobacteria
Sphingopyxis alaskensis RB2256 [AAIP]
98347
98273
-
Thr
GGT
[ENA]
¡û
>C191000369
AP017603
Alphaproteobacteria
Sphingopyxis sp. EG6 [AP017603]
1761999
1761925
-
Thr
GGT
-
¡û
>C191000586
AP017898
Alphaproteobacteria
Sphingopyxis sp. FD7 [AP017898]
1589921
1589847
-
Thr
GGT
-
¡û
>C191163797
CP039250
Alphaproteobacteria
Sphingopyxis sp. PAMC25046 [CP039250]
2122123
2122197
+
Thr
GGT
-
¡û
>W1910744347
MIAL01000016
Alphaproteobacteria
Sphingopyxis sp. RIFCSPHIGHO2_01_FULL_65_24 [MIAL]
401127
401053
-
Thr
GGT
[ENA]
¡û
>W1911494480
OBKE01029676
Unclassified
bacterium [OBKE]
227
153
-
Thr
GGT
[ENA]
¡û
>SRA1000221
SRR001037.119182
Marine Viruses from Arctic Ocean (SRP000129)
79
5
-
Thr
GGT
[SRA]
>C151044404
CP009122
Alphaproteobacteria
Sphingopyxis fribergensis Kp5.2 [CP009122]
2266994
2266920
-
Thr
GGT
[Ensembl]
¡û
>W1510015790
BBRO01000001
Alphaproteobacteria
Sphingopyxis sp. C-1 [BBRO]
2371926
2371852
-
Thr
GGT
[ENA]
¡û
>W1511221178
JNFC01000045
Alphaproteobacteria
Sphingopyxis sp. LC363 [JNFC]
101834
101760
-
Thr
GGT
[ENA]
¡û
>W1511221206
JNFD01000021
Alphaproteobacteria
Sphingopyxis sp. LC81 [JNFD]
182225
182299
+
Thr
GGT
[ENA]
¡û
>W1610727238
LMGF01000005
Alphaproteobacteria
Sphingopyxis sp. Root1497 [LMGF]
1569915
1569841
-
Thr
GGT
[ENA]
¡û
>W1610727347
LMGI01000001
Alphaproteobacteria
Sphingopyxis sp. Root154 [LMGI]
88944
88870
-
Thr
GGT
[ENA]
¡û
>W1610729751
LMIG01000003
Alphaproteobacteria
Sphingopyxis sp. Root214 [LMIG]
1130868
1130942
+
Thr
GGT
[ENA]
¡û
>W1610770882
LNRR01000006
Alphaproteobacteria
Sphingopyxis sp. H005 [LNRR]
27589
27663
+
Thr
GGT
[ENA]
¡û
>W1610770928
LNRS01000005
Alphaproteobacteria
Sphingopyxis sp. H012 [LNRS]
27587
27661
+
Thr
GGT
[ENA]
¡û
>W1610770986
LNRT01000012
Alphaproteobacteria
Sphingopyxis sp. H038 [LNRT]
156401
156327
-
Thr
GGT
[ENA]
¡û
>W1610771018
LNRU01000006
Alphaproteobacteria
Sphingopyxis sp. H053 [LNRU]
57968
58042
+
Thr
GGT
[ENA]
¡û
>W1610771064
LNRV01000012
Alphaproteobacteria
Sphingopyxis sp. H077 [LNRV]
138365
138291
-
Thr
GGT
[ENA]
¡û
>W1610771092
LNRW01000004
Alphaproteobacteria
Sphingopyxis sp. H080 [LNRW]
27585
27659
+
Thr
GGT
[ENA]
¡û
>W1610771140
LNRX01000003
Alphaproteobacteria
Sphingopyxis sp. H085 [LNRX]
295526
295452
-
Thr
GGT
[ENA]
¡û
>W1610771178
LNRY01000003
Alphaproteobacteria
Sphingopyxis sp. H093 [LNRY]
27579
27653
+
Thr
GGT
[ENA]
¡û
>W1610771242
LNRZ01000004
Alphaproteobacteria
Sphingopyxis sp. H050 [LNRZ]
73823
73749
-
Thr
GGT
[ENA]
¡û
>W1610771269
LNSA01000001
Alphaproteobacteria
Sphingopyxis sp. H115 [LNSA]
337455
337381
-
Thr
GGT
[ENA]
¡û
>W1610771317
LNSB01000009
Alphaproteobacteria
Sphingopyxis sp. HIX [LNSB]
47196
47270
+
Thr
GGT
[ENA]
¡û
>W1610771374
LNSC01000025
Alphaproteobacteria
Sphingopyxis sp. HXXIV [LNSC]
12823
12749
-
Thr
GGT
[ENA]
¡û
>W1710540043
FNWK01000002
Alphaproteobacteria
Sphingopyxis sp. YR583 [FNWK]
51337
51411
+
Thr
GGT
[ENA]
¡û
Identical group No.712931 (1 seq.)
>SRA1000191
SRR001036.302815
Marine Viruses from Arctic Ocean (SRP000129)
40
111
+
Thr
GGT
[SRA]
Identical group No.712934 (2 seq.)
>ENV08000289
ABLY01446229
viral fraction from Arctic Ocean
4
76
+
Thr
GGT
[ENA]
¡û
>SRA1000200
SRR001036.332716
Marine Viruses from Arctic Ocean (SRP000129)
4
76
+
Thr
GGT
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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