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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Marine Viruses from Arctic Ocean (SRP000129)
Anticodon = GTT
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.712929 (6 seq.)
>W1712105778
NISJ01000007
Alphaproteobacteria
Sphingopyxis witflariensis [NISJ]
160465
160539
+
Asn
GTT
[ENA]
¡û
>WENV181171186
OEIV010165722
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
205
131
-
Asn
GTT
[ENA]
¢þ
>ENV08000204
ABLY01016215
viral fraction from Arctic Ocean
120
44
-
Asn
GTT
[ENA]
¡û
>ENV08000229
ABLY01057472
viral fraction from Arctic Ocean
17
91
+
Asn
GTT
[ENA]
¡û
>SRA1000155
SRR001036.149757
Marine Viruses from Arctic Ocean (SRP000129)
17
91
+
Asn
GTT
[SRA]
>SRA1000168
SRR001036.245786
Marine Viruses from Arctic Ocean (SRP000129)
120
44
-
Asn
GTT
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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