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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Marine Viruses from Sargasso Sea (SRP000130)
Anticodon = GTC
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.654096 (9 seq.)
>WENV180688316
OCZA010084485
[OCZA] marine metagenome; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
229
302
+
Asp
GTC
[ENA]
¢þ
>ENV08000333
ABLZ01270257
viral fraction from Sargasso Sea
8
81
+
Asp
GTC
[ENA]
¡û
>WENV170139381
CENX01008393
[CENX] marine metagenome genome assembly TARA_018_DCM_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
220
294
+
Asp
GTC
[ENA]
¢þ
>WENV170261160
CERB01043993
[CERB] marine metagenome genome assembly TARA_072_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
3432
3359
-
Asp
GTC
[ENA]
¢þ
>WENV170319112
CESQ01117791
[CESQ] marine metagenome genome assembly TARA_100_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
232
159
-
Asp
GTC
[ENA]
¢þ
>WENV170368939
CETQ01130377
[CETQ] marine metagenome genome assembly TARA_110_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
210
137
-
Asp
GTC
[ENA]
¢þ
>WENV170595590
FUFK011866802
[FUFK] metagenome; unknown
128
201
+
Asp
GTC
[ENA]
¢þ
>SRA1000276
SRR001038.177787
Marine Viruses from Sargasso Sea (SRP000130)
8
81
+
Asp
GTC
[SRA]
>W1810519665
QCFJ01000025
Cyanobacteriota
Prochlorococcus sp. AG-363-G03 [QCFJ]
7803
7730
-
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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