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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Marine Viruses from Sargasso Sea (SRP000130)
Anticodon = TAA
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.86989 (6 seq.)
>ENV08000315
ABLZ01114192
viral fraction from Sargasso Sea
99
12
-
Leu
TAA
[ENA]
¡û
>WENV170177580
CEOU01036825
[CEOU] marine metagenome genome assembly TARA_065_DCM_0.1-0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
710
797
+
Leu
TAA
[ENA]
¢þ
>WENV170290072
CERY01090675
[CERY] marine metagenome genome assembly TARA_065_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
295
208
-
Leu
TAA
[ENA]
¢þ
>WENV170472103
CEVG01138986
[CEVG] marine metagenome genome assembly TARA_140_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1343
1256
-
Leu
TAA
[ENA]
¢þ
>WENV170889155
MDTC01270430
[MDTC] marine metagenome; seawater
1354
1267
-
Leu
TAA
[ENA]
¢þ
>SRA1000265
SRR001038.61913
Marine Viruses from Sargasso Sea (SRP000130)
99
12
-
Leu
TAA
[SRA]
Identical group No.112446 (3 seq.)
>ENV08000319
ABLZ01143039
viral fraction from Sargasso Sea
106
21
-
Leu
TAA
[ENA]
¡û
>WENV170936109
MDTG01269617
[MDTG] marine metagenome; seawater
4657
4742
+
Leu
TAA
[ENA]
¢þ
>SRA1000294
SRR001038.354147
Marine Viruses from Sargasso Sea (SRP000130)
106
21
-
Leu
TAA
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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