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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Marine Viruses from Sargasso Sea (SRP000130)
Anticodon = TGC
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.452886 (5 seq.)
>ENV08000301
ABLZ01068358
viral fraction from Sargasso Sea
2
77
+
Ala
TGC
[ENA]
¡û
>WENV170233381
CEQJ01020375
[CEQJ] marine metagenome genome assembly TARA_076_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
85
160
+
Ala
TGC
[ENA]
¢þ
>WENV170338903
CETB01071097
[CETB] marine metagenome genome assembly TARA_112_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1098
1173
+
Ala
TGC
[ENA]
¢þ
>WENV170890918
MDTD01016544
[MDTD] marine metagenome; seawater
2382
2307
-
Ala
TGC
[ENA]
¢þ
>SRA1000268
SRR001038.85846
Marine Viruses from Sargasso Sea (SRP000130)
2
77
+
Ala
TGC
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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