This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Marine metagenome, Gulf of Maine surface waters
Anticodon = CCC
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.281125 (23 seq.)
>WENV181162864
OEIO01026539
[OEIO] marine metagenome; sea ice
560
633
+
Gly
CCC
[ENA]
¢þ
>WENV181317238
OFJX01008720
[OFJX] marine metagenome; seawater
254
327
+
Gly
CCC
[ENA]
¢þ
>WENV181321698
OFKN01001086
[OFKN] marine metagenome; seawater
1525
1598
+
Gly
CCC
[ENA]
¢þ
>WENV181329380
OFLX01000181
[OFLX] seawater metagenome; seawater
302
229
-
Gly
CCC
[ENA]
¢þ
>WENV181391134
OFRQ01042816
[OFRQ] seawater metagenome; seawater
303
230
-
Gly
CCC
[ENA]
¢þ
>WENV181392094
OFRW01000702
[OFRW] seawater metagenome; seawater
388
315
-
Gly
CCC
[ENA]
¢þ
>WENV182560469
OJDU01002424
[OJDU] seawater metagenome; Sea water
3134
3207
+
Gly
CCC
[ENA]
¢þ
>WENV183616272
OOED01000166
[OOED] marine metagenome; seawater
302
229
-
Gly
CCC
[ENA]
¢þ
>WENV183621911
OOFV01000704
[OOFV] marine metagenome; seawater
445
372
-
Gly
CCC
[ENA]
¢þ
>WENV183626234
OOGH01043429
[OOGH] marine metagenome; seawater
303
230
-
Gly
CCC
[ENA]
¢þ
>WENV183626799
OOGK01000722
[OOGK] marine metagenome; seawater
2173
2246
+
Gly
CCC
[ENA]
¢þ
>WENV183630274
OOGS01000837
[OOGS] marine metagenome; seawater
929
1002
+
Gly
CCC
[ENA]
¢þ
>WENV170297543
CESE01195574
[CESE] marine metagenome genome assembly TARA_085_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
60
133
+
Gly
CCC
[ENA]
¢þ
>WENV170567913
FLMP01009727
[FLMP] seawater metagenome; seawater
388
315
-
Gly
CCC
[ENA]
¢þ
>WENV170624988
FUWD013189568
[FUWD] metagenome; unknown
890
963
+
Gly
CCC
[ENA]
¢þ
>WENV170633248
FUWD013393150
[FUWD] metagenome; unknown
890
963
+
Gly
CCC
[ENA]
¢þ
>WENV170763603
LWDU01013863
[LWDU] hydrothermal vent metagenome; deep sea hydrothermal plume seawater
1093
1166
+
Gly
CCC
[ENA]
¢þ
>WENV170952683
MEHZ011609988
[MEHZ] marine metagenome; marine surface water
191
264
+
Gly
CCC
[ENA]
¢þ
>WENV170953505
MEHZ011648817
[MEHZ] marine metagenome; marine surface water
586
513
-
Gly
CCC
[ENA]
¢þ
>WENV11101296
AGBE01000231
Marine metagenome, Gulf of Maine surface waters
161
234
+
Gly
CCC
[ENA]
¡û
>WENV11101375
AGBE01002069
Marine metagenome, Gulf of Maine surface waters
6351
6278
-
Gly
CCC
[ENA]
¡û
>W1610625307
LIAK01000163
Nitrososphaerota
Nitrosopumilus sp. BACL13 MAG-120910-bin56 [LIAK]
298
225
-
Gly
CCC
[ENA]
¡û
>W1610625329
LIAL01000041
Nitrososphaerota
Nitrosopumilus sp. BACL13 MAG-121220-bin23 [LIAL]
9116
9043
-
Gly
CCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK