tRNA genes clustered and arranged according to each identical group

Marine metagenome, Gulf of Maine surface waters

Anticodon = GCA

HIT: 1 Group(s).
Download Sequence Representative sequence of each cluster
View ClustalW result
Sort by Identical group No. Sort by the number of tRNAs in the Identical group
Select
 Sequence ID Genome ID
(or Accession No.)		 Phylum/Class
(Sample source for ENV)		 Species Start End Direction AA Anticodon Genome/Seq. Info. Decision
Identical group No.659487 (115 seq.)
>A171003420 CP003843 Nitrososphaerota Candidatus Nitrosopumilus sediminis AR2 [CP003843] 1317654 1317725 + Pseudo GCA - ¡û
>A171006035 CP011070 Nitrososphaerota Nitrosopumilus adriaticus NF5 [CP011070] 379266 379195 - Pseudo GCA - ¡û
>A171007075 CP021324 Nitrososphaerota Candidatus Nitrosomarinus catalina SPOT01 [CP021324] 270722 270651 - Pseudo GCA - ¡û
>WENV016613 AACY020466739 Marine microbial communities from Global Ocean Sampling (GOS) 751 677 - Cys GCA [ENA]
>WENV180038665 LLBY010001530 [LLBY] soil metagenome; soil from tomato rhizosphere 975 904 - Cys GCA [ENA] ¢þ
>WENV180041665 LLBZ010268312 [LLBZ] soil metagenome; soil from tomato rhizosphere 12 83 + Cys GCA [ENA] ¢þ
>WENV180050166 MPLU02115157 [MPLU] marine metagenome; 90 m water sample filtered on 0.2 um supor filter 4961 4890 - Cys GCA [ENA] ¢þ
>WENV180050771 MPLU02167606 [MPLU] marine metagenome; 90 m water sample filtered on 0.2 um supor filter 721 792 + Cys GCA [ENA] ¢þ
>WENV180054347 MPLV02084599 [MPLV] marine metagenome; 100 m water sample filtered on 0.2 um supor filter 27977 27906 - Cys GCA [ENA] ¢þ
>WENV180054891 MPLV02119855 [MPLV] marine metagenome; 100 m water sample filtered on 0.2 um supor filter 228 299 + Cys GCA [ENA] ¢þ
>WENV180060361 MPLX02165058 [MPLX] marine metagenome; 120 m water sample filtered on 0.2 um supor filter 27977 27906 - Cys GCA [ENA] ¢þ
>WENV180094258 MPMF02375723 [MPMF] marine metagenome; 120 m water sample prefiltered with 30 um filter, filtered on to 0.2 um supor filter 776 705 - Cys GCA [ENA] ¢þ
>WENV180115705 OAPT01022893 [OAPT] marine metagenome; seawater 455 384 - Cys GCA [ENA] ¢þ
>WENV181092406 OEBK01000283 [OEBK] marine metagenome; ENVO:00002010 for 'seawater 1267 1196 - Cys GCA [ENA] ¢þ
>WENV181162900 OEIO01035273 [OEIO] marine metagenome; sea ice 379 308 - Cys GCA [ENA] ¢þ
>WENV181304725 OFIB01006872 [OFIB] marine metagenome; seawater 256 327 + Cys GCA [ENA] ¢þ
>WENV181306103 OFIJ01006315 [OFIJ] marine metagenome; seawater 396 325 - Cys GCA [ENA] ¢þ
>WENV181307231 OFIP01006891 [OFIP] marine metagenome; seawater 548 477 - Cys GCA [ENA] ¢þ
>WENV181308645 OFIT01004212 [OFIT] marine metagenome; seawater 630 559 - Cys GCA [ENA] ¢þ
>WENV181315709 OFJQ01002836 [OFJQ] marine metagenome; seawater 356 285 - Cys GCA [ENA] ¢þ
>WENV181315880 OFJR01001239 [OFJR] marine metagenome; seawater 203 274 + Cys GCA [ENA] ¢þ
>WENV181317081 OFJX01000154 [OFJX] marine metagenome; seawater 2641 2570 - Cys GCA [ENA] ¢þ
>WENV181318640 OFKA01003332 [OFKA] marine metagenome; seawater 557 486 - Cys GCA [ENA] ¢þ
>WENV181318751 OFKA01015246 [OFKA] marine metagenome; seawater 326 397 + Cys GCA [ENA] ¢þ
>WENV181319161 OFKC01025553 [OFKC] marine metagenome; seawater 232 161 - Cys GCA [ENA] ¢þ
>WENV181320292 OFKG01008904 [OFKG] marine metagenome; seawater 310 381 + Cys GCA [ENA] ¢þ
>WENV181320672 OFKI01006960 [OFKI] marine metagenome; seawater 141 70 - Cys GCA [ENA] ¢þ
>WENV181329395 OFLX01000482 [OFLX] seawater metagenome; seawater 1429 1500 + Cys GCA [ENA] ¢þ
>WENV181371027 OFQU01008588 [OFQU] wastewater metagenome; Exp Tend CN 90WW 1174 1103 - Cys GCA [ENA] ¢þ
>WENV181377524 OFRA01014682 [OFRA] wastewater metagenome; Lake Maggiore Verbania 111 182 + Cys GCA [ENA] ¢þ
>WENV181379759 OFRD01007728 [OFRD] wastewater metagenome; Exp Tend CN 100WW 454 525 + Cys GCA [ENA] ¢þ
>WENV181386390 OFRL01003169 [OFRL] wastewater metagenome; Lake Maggiore Cannobio 2473 2402 - Cys GCA [ENA] ¢þ
>WENV181390999 OFRQ01014423 [OFRQ] seawater metagenome; seawater 694 623 - Cys GCA [ENA] ¢þ
>WENV182560490 OJDU01003003 [OJDU] seawater metagenome; Sea water 482 553 + Cys GCA [ENA] ¢þ
>WENV183616303 OOED01001360 [OOED] marine metagenome; seawater 687 758 + Cys GCA [ENA] ¢þ
>WENV183618242 OOFN01009385 [OOFN] marine metagenome; seawater 409 338 - Cys GCA [ENA] ¢þ
>WENV183621834 OOFV01000039 [OOFV] marine metagenome; seawater 8752 8823 + Cys GCA [ENA] ¢þ
>WENV183624078 OOGB01021482 [OOGB] marine metagenome; sea ice 554 483 - Cys GCA [ENA] ¢þ
>WENV183626109 OOGH01014585 [OOGH] marine metagenome; seawater 203 274 + Cys GCA [ENA] ¢þ
>WENV183626642 OOGJ01003539 [OOGJ] marine metagenome; seawater 510 581 + Cys GCA [ENA] ¢þ
>WENV183630430 OOGS01013640 [OOGS] marine metagenome; seawater 379 450 + Cys GCA [ENA] ¢þ
>WENV183796289 PVBE010235141 [PVBE] marine metagenome; water 22803 22732 - Cys GCA [ENA] ¢þ
>WENV183796984 PVBE010294536 [PVBE] marine metagenome; water 1042 971 - Cys GCA [ENA] ¢þ
>WENV183806011 PVBE011074940 [PVBE] marine metagenome; water 963 892 - Cys GCA [ENA] ¢þ
>WENV170114682 CENF01213223 [CENF] marine metagenome genome assembly TARA_004_DCM_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 2151 2222 + Cys GCA [ENA] ¢þ
>WENV170146313 CENZ01046266 [CENZ] marine metagenome genome assembly TARA_025_DCM_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 2625 2554 - Cys GCA [ENA] ¢þ
>WENV170154992 CEOF01388865 [CEOF] marine metagenome genome assembly TARA_018_SRF_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 546 617 + Cys GCA [ENA] ¢þ
>WENV170170085 CEOP01323392 [CEOP] marine metagenome genome assembly TARA_009_DCM_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 73 2 - Cys GCA [ENA] ¢þ
>WENV170226861 CEQF01022069 [CEQF] marine metagenome genome assembly TARA_068_MES_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 174 103 - Cys GCA [ENA] ¢þ
>WENV170271910 CERK01018494 [CERK] marine metagenome genome assembly TARA_066_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 1614 1543 - Cys GCA [ENA] ¢þ
>WENV170273363 CERL01078550 [CERL] marine metagenome genome assembly TARA_068_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 1278 1349 + Cys GCA [ENA] ¢þ
>WENV170282661 CERS01248138 [CERS] marine metagenome genome assembly TARA_068_SRF_0.22-0.45 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 94 23 - Cys GCA [ENA] ¢þ
>WENV170285654 CERW01007653 [CERW] marine metagenome genome assembly TARA_066_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 1026 955 - Cys GCA [ENA] ¢þ
>WENV170294788 CESC01161292 [CESC] marine metagenome genome assembly TARA_078_MES_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 1098 1169 + Cys GCA [ENA] ¢þ
>WENV170321567 CESR01064130 [CESR] marine metagenome genome assembly TARA_100_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 12684 12613 - Cys GCA [ENA] ¢þ
>WENV170322755 CESR01165568 [CESR] marine metagenome genome assembly TARA_100_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 793 722 - Cys GCA [ENA] ¢þ
>WENV170325118 CESS01198902 [CESS] marine metagenome genome assembly TARA_023_DCM_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 74 3 - Cys GCA [ENA] ¢þ
>WENV170379379 CETV01122320 [CETV] marine metagenome genome assembly TARA_133_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 311 382 + Cys GCA [ENA] ¢þ
>WENV170389188 CETZ01260238 [CETZ] marine metagenome genome assembly TARA_132_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 254 183 - Cys GCA [ENA] ¢þ
>WENV170396010 CEUC01150887 [CEUC] marine metagenome genome assembly TARA_137_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 3976 4047 + Cys GCA [ENA] ¢þ
>WENV170475196 CEVH01272438 [CEVH] marine metagenome genome assembly TARA_141_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 358 287 - Cys GCA [ENA] ¢þ
>WENV170478238 CEVK01026684 [CEVK] marine metagenome genome assembly TARA_149_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 186 115 - Cys GCA [ENA] ¢þ
>WENV170487761 CEVO01089259 [CEVO] marine metagenome genome assembly TARA_152_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 291 220 - Cys GCA [ENA] ¢þ
>WENV170492849 CEVQ01243471 [CEVQ] marine metagenome genome assembly TARA_148b_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 245 174 - Cys GCA [ENA] ¢þ
>WENV170503413 CEVV01089098 [CEVV] marine metagenome genome assembly TARA_152_MIX_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 2305 2234 - Cys GCA [ENA] ¢þ
>WENV170507061 CEVX01014210 [CEVX] marine metagenome genome assembly TARA_152_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 2305 2234 - Cys GCA [ENA] ¢þ
>WENV170566729 FLLY01000699 [FLLY] seawater metagenome; seawater 669 598 - Cys GCA [ENA] ¢þ
>WENV170568791 FLMP01079295 [FLMP] seawater metagenome; seawater 420 349 - Cys GCA [ENA] ¢þ
>WENV170570490 FLOH01000006 [FLOH] marine metagenome; water 345813 345742 - Cys GCA [ENA] ¢þ
>WENV170571870 FLOH01000351 [FLOH] marine metagenome; water 13561 13632 + Cys GCA [ENA] ¢þ
>WENV170598725 FUWD010046529 [FUWD] metagenome; unknown 46 117 + Cys GCA [ENA] ¢þ
>WENV170598936 FUWD010055742 [FUWD] metagenome; unknown 462 391 - Cys GCA [ENA] ¢þ
>WENV170599755 FUWD010090879 [FUWD] metagenome; unknown 454 383 - Cys GCA [ENA] ¢þ
>WENV170616855 FUWD012904857 [FUWD] metagenome; unknown 3086 3157 + Cys GCA [ENA] ¢þ
>WENV170616861 FUWD012905342 [FUWD] metagenome; unknown 382 311 - Cys GCA [ENA] ¢þ
>WENV170619973 FUWD013023809 [FUWD] metagenome; unknown 1686 1757 + Cys GCA [ENA] ¢þ
>WENV170620815 FUWD013040502 [FUWD] metagenome; unknown 712 783 + Cys GCA [ENA] ¢þ
>WENV170622428 FUWD013103416 [FUWD] metagenome; unknown 341 270 - Cys GCA [ENA] ¢þ
>WENV170624695 FUWD013185201 [FUWD] metagenome; unknown 253 324 + Cys GCA [ENA] ¢þ
>WENV170624715 FUWD013185402 [FUWD] metagenome; unknown 1376 1305 - Cys GCA [ENA] ¢þ
>WENV170625720 FUWD013204078 [FUWD] metagenome; unknown 1479 1550 + Cys GCA [ENA] ¢þ
>WENV170628103 FUWD013241846 [FUWD] metagenome; unknown 1686 1757 + Cys GCA [ENA] ¢þ
>WENV170628965 FUWD013257599 [FUWD] metagenome; unknown 712 783 + Cys GCA [ENA] ¢þ
>WENV170630652 FUWD013317822 [FUWD] metagenome; unknown 341 270 - Cys GCA [ENA] ¢þ
>WENV170632976 FUWD013389466 [FUWD] metagenome; unknown 253 324 + Cys GCA [ENA] ¢þ
>WENV170632994 FUWD013389635 [FUWD] metagenome; unknown 1376 1305 - Cys GCA [ENA] ¢þ
>WENV170633942 FUWD013406034 [FUWD] metagenome; unknown 1479 1550 + Cys GCA [ENA] ¢þ
>WENV170750184 LUMG01000869 [LUMG] marine metagenome; Red Sea water column Station 34 - depth 50m 2809 2880 + Cys GCA [ENA] ¢þ
>WENV170756712 LUMP01000638 [LUMP] marine metagenome; Red Sea water column Station 12 - depth 47m 9314 9385 + Cys GCA [ENA] ¢þ
>WENV170763456 LWDU01010219 [LWDU] hydrothermal vent metagenome; deep sea hydrothermal plume seawater 3555 3626 + Cys GCA [ENA] ¢þ
>WENV170763846 LWDU01022321 [LWDU] hydrothermal vent metagenome; deep sea hydrothermal plume seawater 1965 2036 + Cys GCA [ENA] ¢þ
>WENV170882708 MDTC01152686 [MDTC] marine metagenome; seawater 20076 20147 + Cys GCA [ENA] ¢þ
>WENV170903946 MDTE01005244 [MDTE] marine metagenome; seawater 1358 1287 - Cys GCA [ENA] ¢þ
>WENV170945639 MDUP01029974 [MDUP] marine metagenome; 85 m water sample from station 6 377 306 - Cys GCA [ENA] ¢þ
>WENV170953212 MEHZ011634085 [MEHZ] marine metagenome; marine surface water 589 518 - Cys GCA [ENA] ¢þ
>WENV170953219 MEHZ011634518 [MEHZ] marine metagenome; marine surface water 2862 2791 - Cys GCA [ENA] ¢þ
>W1910126235 BGKI01000006 Nitrososphaerota Nitrosopumilus zosterae sp. NM25 [BGKI] 30377 30449 + Cys GCA [ENA] ¡û
>WENV11101308 AGBE01000667 Marine metagenome, Gulf of Maine surface waters 1230 1301 + Pseudo GCA [ENA] ¡û
>WENV11101319 AGBE01001109 Marine metagenome, Gulf of Maine surface waters 834 763 - Pseudo GCA [ENA] ¡û
>WENV11101376 AGBE01002111 Marine metagenome, Gulf of Maine surface waters 10360 10431 + Pseudo GCA [ENA] ¡û
>WENV11101387 AGBE01002140 Marine metagenome, Gulf of Maine surface waters 36182 36253 + Pseudo GCA [ENA] ¡û
>WENV056873 AACY023270610 Marine microbial communities from Global Ocean Sampling (GOS) 548 622 + Cys GCA [ENA]
>WENV057004 AACY023279264 Marine microbial communities from Global Ocean Sampling (GOS) 756 682 - Cys GCA [ENA]
>W1610002171 AEGP01000065 Nitrososphaerota Candidatus Nitrosarchaeum limnium limnia SFB1 [AEGP] 47063 47134 + Pseudo GCA [ENA] ¡û
>W1610003104 AEXL02000128 Nitrososphaerota Candidatus Nitrosopumilus salaria salaria BD31 [AEXL] 4398 4327 - Pseudo GCA [ENA] ¡û
>W1610003298 AFPU01000001 Nitrososphaerota Nitrosarchaeum koreense koreensis MY1 [AFPU] 1256128 1256199 + Pseudo GCA [ENA] ¡û
>W1610004517 AHJG01000113 Nitrososphaerota Candidatus Nitrosarchaeum limnium limnia BG20 [AHJG] 17341 17412 + Pseudo GCA [ENA] ¡û
>W1610005465 AJVJ01000050 Nitrososphaerota Nitrosopumilus sp. AR [AJVJ] 22944 22873 - Pseudo GCA [ENA] ¡û
>WENV069415 AACY023765609 Marine microbial communities from Global Ocean Sampling (GOS) 298 372 + Cys GCA [ENA]
>W1610597492 LFEW01000013 Nitrososphaerota Thaumarchaeota archaeon casp-thauma1 [LFEW] 28830 28901 + Pseudo GCA [ENA] ¡û
>W1610597529 LFEY01000024 Nitrososphaerota Thaumarchaeota archaeon casp-thauma3 [LFEY] 28255 28184 - Pseudo GCA [ENA] ¡û
>W1610617267 LGTD01001058 Nitrososphaerota Candidatus Nitrosopumilus sp. DDS1 [LGTD] 3036 2965 - Pseudo GCA [ENA] ¡û
>W1610625311 LIAK01000312 Nitrososphaerota Nitrosopumilus sp. BACL13 MAG-120910-bin56 [LIAK] 478 549 + Pseudo GCA [ENA] ¡û
>W1610625325 LIAL01000013 Nitrososphaerota Nitrosopumilus sp. BACL13 MAG-121220-bin23 [LIAL] 11328 11399 + Pseudo GCA [ENA] ¡û
>W1610855514 LQMW01000017 Nitrososphaerota Nitrosopumilus sp. Nsub [LQMW] 163949 164020 + Pseudo GCA [ENA] ¡û
Select
 Sequence ID Genome ID
(or Accession No.)		 Phylum/Class
(Sample source for ENV)		 Species Start End Direction AA Anticodon Genome/Seq. Info. Decision
Download Sequence Representative sequence of each cluster
View ClustalW result

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