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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Marine metagenome, Gulf of Maine surface waters
Anticodon = GGT
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.281127 (3 seq.)
>WENV181316036
OFJR01016440
[OFJR] marine metagenome; seawater
107
34
-
Thr
GGT
[ENA]
¢þ
>WENV170482418
CEVM01028534
[CEVM] marine metagenome genome assembly TARA_145_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
133
206
+
Thr
GGT
[ENA]
¢þ
>WENV11101302
AGBE01000355
Marine metagenome, Gulf of Maine surface waters
434
507
+
Thr
GGT
[ENA]
¡û
Identical group No.281136 (16 seq.)
>WENV181316490
OFJU01006163
[OFJU] marine metagenome; seawater
604
677
+
Thr
GGT
[ENA]
¢þ
>WENV181320641
OFKI01003774
[OFKI] marine metagenome; seawater
744
817
+
Thr
GGT
[ENA]
¢þ
>WENV181321747
OFKN01003265
[OFKN] marine metagenome; seawater
612
685
+
Thr
GGT
[ENA]
¢þ
>WENV183618136
OOFN01001553
[OOFN] marine metagenome; seawater
486
559
+
Thr
GGT
[ENA]
¢þ
>WENV183621841
OOFV01000049
[OOFV] marine metagenome; seawater
5591
5664
+
Thr
GGT
[ENA]
¢þ
>WENV183624083
OOGB01022893
[OOGB] marine metagenome; sea ice
435
508
+
Thr
GGT
[ENA]
¢þ
>WENV183630218
OOGS01000069
[OOGS] marine metagenome; seawater
7733
7660
-
Thr
GGT
[ENA]
¢þ
>WENV170532096
CEWO01018982
[CEWO] marine metagenome genome assembly TARA_145_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
438
365
-
Thr
GGT
[ENA]
¢þ
>WENV170571873
FLOH01000351
[FLOH] marine metagenome; water
48026
48099
+
Thr
GGT
[ENA]
¢þ
>WENV170598992
FUWD010057472
[FUWD] metagenome; unknown
387
460
+
Thr
GGT
[ENA]
¢þ
>WENV170950775
MEHZ011517196
[MEHZ] marine metagenome; marine surface water
615
688
+
Thr
GGT
[ENA]
¢þ
>WENV11101334
AGBE01001837
Marine metagenome, Gulf of Maine surface waters
2616
2689
+
Thr
GGT
[ENA]
¡û
>WENV11101391
AGBE01002141
Marine metagenome, Gulf of Maine surface waters
29253
29326
+
Thr
GGT
[ENA]
¡û
>W1610625302
LIAK01000051
Nitrososphaerota
Nitrosopumilus sp. BACL13 MAG-120910-bin56 [LIAK]
674
601
-
Thr
GGT
[ENA]
¡û
>W1610625334
LIAL01000053
Nitrososphaerota
Nitrosopumilus sp. BACL13 MAG-121220-bin23 [LIAL]
2966
2893
-
Thr
GGT
[ENA]
¡û
>WENV076350
AACY024094776
Marine microbial communities from Global Ocean Sampling (GOS)
1558
1634
+
Thr
GGT
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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