tRNA genes clustered and arranged according to each identical group

Marine metagenome, Gulf of Maine surface waters

Anticodon = TAC

HIT: 2 Group(s).
Download Sequence Representative sequence of each cluster
View ClustalW result
Sort by Identical group No. Sort by the number of tRNAs in the Identical group
Select
 Sequence ID Genome ID
(or Accession No.)		 Phylum/Class
(Sample source for ENV)		 Species Start End Direction AA Anticodon Genome/Seq. Info. Decision
Identical group No.242067 (49 seq.)
>A171007063 CP021324 Nitrososphaerota Candidatus Nitrosomarinus catalina SPOT01 [CP021324] 1200167 1200092 - Val TAC - ¡û
>WENV180050828 MPLU02173480 [MPLU] marine metagenome; 90 m water sample filtered on 0.2 um supor filter 1784 1859 + Val TAC [ENA] ¢þ
>WENV180055234 MPLV02145543 [MPLV] marine metagenome; 100 m water sample filtered on 0.2 um supor filter 4861 4937 + Val TAC [ENA] ¢þ
>WENV181092445 OEBK01001209 [OEBK] marine metagenome; ENVO:00002010 for 'seawater 279 354 + Val TAC [ENA] ¢þ
>WENV181306950 OFIO01003896 [OFIO] marine metagenome; seawater 611 535 - Val TAC [ENA] ¢þ
>WENV181307230 OFIP01006857 [OFIP] marine metagenome; seawater 134 210 + Val TAC [ENA] ¢þ
>WENV181308647 OFIT01004461 [OFIT] marine metagenome; seawater 230 306 + Val TAC [ENA] ¢þ
>WENV181309299 OFIV01002277 [OFIV] marine metagenome; seawater 282 358 + Val TAC [ENA] ¢þ
>WENV181315710 OFJQ01002946 [OFJQ] marine metagenome; seawater 297 373 + Val TAC [ENA] ¢þ
>WENV181315884 OFJR01001621 [OFJR] marine metagenome; seawater 524 448 - Val TAC [ENA] ¢þ
>WENV181316537 OFJU01010636 [OFJU] marine metagenome; seawater 505 429 - Val TAC [ENA] ¢þ
>WENV181318651 OFKA01004832 [OFKA] marine metagenome; seawater 80 156 + Val TAC [ENA] ¢þ
>WENV181320316 OFKG01011162 [OFKG] marine metagenome; seawater 196 272 + Val TAC [ENA] ¢þ
>WENV181323344 OFKX01008521 [OFKX] marine metagenome; seawater 519 443 - Val TAC [ENA] ¢þ
>WENV181371148 OFQU01035584 [OFQU] wastewater metagenome; Exp Tend CN 90WW 162 238 + Val TAC [ENA] ¢þ
>WENV181377853 OFRA01038057 [OFRA] wastewater metagenome; Lake Maggiore Verbania 352 276 - Val TAC [ENA] ¢þ
>WENV181379997 OFRD01019700 [OFRD] wastewater metagenome; Exp Tend CN 100WW 266 190 - Val TAC [ENA] ¢þ
>WENV181386597 OFRL01007788 [OFRL] wastewater metagenome; Lake Maggiore Cannobio 1027 1103 + Val TAC [ENA] ¢þ
>WENV183803172 PVBE010818701 [PVBE] marine metagenome; water 7575 7499 - Val TAC [ENA] ¢þ
>WENV170144469 CENY01153546 [CENY] marine metagenome genome assembly TARA_032_DCM_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 931 856 - Val TAC [ENA] ¢þ
>WENV170153287 CEOF01076437 [CEOF] marine metagenome genome assembly TARA_018_SRF_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 8308 8233 - Val TAC [ENA] ¢þ
>WENV170274199 CERM01003726 [CERM] marine metagenome genome assembly TARA_067_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 1496 1420 - Val TAC [ENA] ¢þ
>WENV170288713 CERX01116508 [CERX] marine metagenome genome assembly TARA_068_DCM_0.22-0.45 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 194 269 + Val TAC [ENA] ¢þ
>WENV170324313 CESS01071253 [CESS] marine metagenome genome assembly TARA_023_DCM_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 1991 1916 - Val TAC [ENA] ¢þ
>WENV170378292 CETV01009608 [CETV] marine metagenome genome assembly TARA_133_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 91 167 + Val TAC [ENA] ¢þ
>WENV170474032 CEVH01095341 [CEVH] marine metagenome genome assembly TARA_141_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 135 210 + Val TAC [ENA] ¢þ
>WENV170475859 CEVI01042119 [CEVI] marine metagenome genome assembly TARA_142_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 596 672 + Val TAC [ENA] ¢þ
>WENV170491800 CEVQ01096554 [CEVQ] marine metagenome genome assembly TARA_148b_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 778 853 + Val TAC [ENA] ¢þ
>WENV170507784 CEVX01089752 [CEVX] marine metagenome genome assembly TARA_152_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 1120 1195 + Val TAC [ENA] ¢þ
>WENV170532235 CEWO01027068 [CEWO] marine metagenome genome assembly TARA_145_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 321 396 + Val TAC [ENA] ¢þ
>WENV170532661 CEWO01057820 [CEWO] marine metagenome genome assembly TARA_145_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 370 446 + Val TAC [ENA] ¢þ
>WENV170599172 FUWD010065574 [FUWD] metagenome; unknown 83 7 - Val TAC [ENA] ¢þ
>WENV170616321 FUWD012884732 [FUWD] metagenome; unknown 588 512 - Val TAC [ENA] ¢þ
>WENV170616341 FUWD012885510 [FUWD] metagenome; unknown 616 691 + Val TAC [ENA] ¢þ
>WENV170616376 FUWD012886162 [FUWD] metagenome; unknown 475 399 - Val TAC [ENA] ¢þ
>WENV170616377 FUWD012886163 [FUWD] metagenome; unknown 91 15 - Val TAC [ENA] ¢þ
>WENV170617276 FUWD012919891 [FUWD] metagenome; unknown 360 284 - Val TAC [ENA] ¢þ
>WENV170625074 FUWD013191263 [FUWD] metagenome; unknown 352 428 + Val TAC [ENA] ¢þ
>WENV170633328 FUWD013394601 [FUWD] metagenome; unknown 352 428 + Val TAC [ENA] ¢þ
>WENV170750225 LUMG01001380 [LUMG] marine metagenome; Red Sea water column Station 34 - depth 50m 5580 5505 - Val TAC [ENA] ¢þ
>WENV170756564 LUMP01000129 [LUMP] marine metagenome; Red Sea water column Station 12 - depth 47m 17028 17103 + Val TAC [ENA] ¢þ
>WENV170818043 MDSX01062401 [MDSX] marine metagenome; seawater 24 100 + Val TAC [ENA] ¢þ
>WENV170905554 MDTE01026984 [MDTE] marine metagenome; seawater 528 603 + Val TAC [ENA] ¢þ
>WENV11101294 AGBE01000213 Marine metagenome, Gulf of Maine surface waters 533 609 + Val TAC [ENA] ¡û
>WENV11101298 AGBE01000298 Marine metagenome, Gulf of Maine surface waters 609 534 - Val TAC [ENA] ¡û
>WENV11101384 AGBE01002132 Marine metagenome, Gulf of Maine surface waters 48169 48245 + Val TAC [ENA] ¡û
>WENV046917 AACY022629162 Marine microbial communities from Global Ocean Sampling (GOS) 501 422 - Val TAC [ENA]
>W1610597478 LFEW01000002 Nitrososphaerota Thaumarchaeota archaeon casp-thauma1 [LFEW] 5980 5904 - Val TAC [ENA] ¡û
>W1610855533 LQMW01000024 Nitrososphaerota Nitrosopumilus sp. Nsub [LQMW] 21660 21584 - Val TAC [ENA] ¡û
Identical group No.242072 (15 seq.)
>WENV181317115 OFJX01001528 [OFJX] marine metagenome; seawater 906 982 + Val TAC [ENA] ¢þ
>WENV181320734 OFKI01012930 [OFKI] marine metagenome; seawater 507 583 + Val TAC [ENA] ¢þ
>WENV182560600 OJDU01009650 [OJDU] seawater metagenome; Sea water 862 786 - Val TAC [ENA] ¢þ
>WENV183616344 OOED01004372 [OOED] marine metagenome; seawater 115 191 + Val TAC [ENA] ¢þ
>WENV183622335 OOFV01027754 [OOFV] marine metagenome; seawater 169 93 - Val TAC [ENA] ¢þ
>WENV183626615 OOGJ01001676 [OOGJ] marine metagenome; seawater 756 680 - Val TAC [ENA] ¢þ
>WENV183630451 OOGS01016999 [OOGS] marine metagenome; seawater 529 605 + Val TAC [ENA] ¢þ
>WENV170297591 CESE01237693 [CESE] marine metagenome genome assembly TARA_085_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 326 250 - Val TAC [ENA] ¢þ
>WENV170572302 FLOH01000716 [FLOH] marine metagenome; water 57687 57763 + Val TAC [ENA] ¢þ
>WENV170952336 MEHZ011593267 [MEHZ] marine metagenome; marine surface water 341 417 + Val TAC [ENA] ¢þ
>WENV170952536 MEHZ011602817 [MEHZ] marine metagenome; marine surface water 3355 3279 - Val TAC [ENA] ¢þ
>ENV09004366 ADKQ01009404 Marine metagenome apWin_C1 593 669 + Val TAC [ENA] ¡û
>ENV09004414 ADKQ01014919 Marine metagenome apWin_C1 630 706 + Val TAC [ENA] ¡û
>WENV11101338 AGBE01001870 Marine metagenome, Gulf of Maine surface waters 3178 3102 - Val TAC [ENA] ¡û
>W1610625317 LIAL01000006 Nitrososphaerota Nitrosopumilus sp. BACL13 MAG-121220-bin23 [LIAL] 4684 4760 + Val TAC [ENA] ¡û
Select
 Sequence ID Genome ID
(or Accession No.)		 Phylum/Class
(Sample source for ENV)		 Species Start End Direction AA Anticodon Genome/Seq. Info. Decision
Download Sequence Representative sequence of each cluster
View ClustalW result

BACK