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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Marine metagenome apSum_C1
Anticodon = ACG
HIT:
4 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.277848 (73 seq.)
>WENV180113678
OAPR01007479
[OAPR] marine metagenome; seawater
768
844
+
Arg
ACG
[ENA]
¢þ
>WENV180299778
OBJC01118221
[OBJC] metagenome; water
29
105
+
Arg
ACG
[ENA]
¢þ
>WENV180356711
OBNL01011531
[OBNL] marine metagenome; ENVO:00002010
235
311
+
Arg
ACG
[ENA]
¢þ
>WENV180396376
OBPV01000704
[OBPV] marine metagenome; ENVO:00002010
1232
1156
-
Arg
ACG
[ENA]
¢þ
>WENV180585113
OCOK01004041
[OCOK] marine metagenome; ENVO:00002010
333
409
+
Arg
ACG
[ENA]
¢þ
>WENV180590379
OCOT01004187
[OCOT] marine metagenome; ENVO:00002010
318
242
-
Arg
ACG
[ENA]
¢þ
>WENV181313869
OFJH01017200
[OFJH] marine metagenome; seawater
124
200
+
Arg
ACG
[ENA]
¢þ
>WENV181319219
OFKD01000457
[OFKD] marine metagenome; seawater
1417
1341
-
Arg
ACG
[ENA]
¢þ
>WENV181325461
OFLJ01000923
[OFLJ] seawater metagenome; seawater
3263
3187
-
Arg
ACG
[ENA]
¢þ
>WENV181391550
OFRT01021321
[OFRT] seawater metagenome; seawater
544
468
-
Arg
ACG
[ENA]
¢þ
>WENV181392151
OFRW01005164
[OFRW] seawater metagenome; seawater
396
472
+
Arg
ACG
[ENA]
¢þ
>WENV181392695
OFRX01001931
[OFRX] seawater metagenome; seawater
1340
1416
+
Arg
ACG
[ENA]
¢þ
>WENV182540549
OJAJ01011487
[OJAJ] seawater metagenome; Sea water
180
104
-
Arg
ACG
[ENA]
¢þ
>WENV182541273
OJAT01000594
[OJAT] seawater metagenome; Sea water
1262
1186
-
Arg
ACG
[ENA]
¢þ
>WENV182543207
OJBA01004031
[OJBA] seawater metagenome; Sea water
1526
1450
-
Arg
ACG
[ENA]
¢þ
>WENV182548039
OJBV01000024
[OJBV] seawater metagenome; Sea water
1591
1515
-
Arg
ACG
[ENA]
¢þ
>WENV182548057
OJBV01000058
[OJBV] seawater metagenome; Sea water
13761
13837
+
Arg
ACG
[ENA]
¢þ
>WENV182550301
OJCA01000045
[OJCA] seawater metagenome; Sea water
17310
17386
+
Arg
ACG
[ENA]
¢þ
>WENV182551227
OJCC01000046
[OJCC] seawater metagenome; Sea water
10321
10397
+
Arg
ACG
[ENA]
¢þ
>WENV182551259
OJCC01000208
[OJCC] seawater metagenome; Sea water
3153
3229
+
Arg
ACG
[ENA]
¢þ
>WENV182551557
OJCD01001412
[OJCD] seawater metagenome; Sea water
217
141
-
Arg
ACG
[ENA]
¢þ
>WENV182554166
OJCT01006472
[OJCT] seawater metagenome; Sea water
575
651
+
Arg
ACG
[ENA]
¢þ
>WENV182562752
OJEA01001148
[OJEA] seawater metagenome; Sea water
1064
1140
+
Arg
ACG
[ENA]
¢þ
>WENV182563478
OJEC01000970
[OJEC] seawater metagenome; Sea water
884
808
-
Arg
ACG
[ENA]
¢þ
>WENV182565230
OJEH01000590
[OJEH] seawater metagenome; Sea water
10618
10694
+
Arg
ACG
[ENA]
¢þ
>WENV182568465
OJEU01001396
[OJEU] seawater metagenome; Sea water
848
924
+
Arg
ACG
[ENA]
¢þ
>WENV182569383
OJEZ01000031
[OJEZ] seawater metagenome; Sea water
11063
11139
+
Arg
ACG
[ENA]
¢þ
>WENV182570234
OJFC01000231
[OJFC] seawater metagenome; Sea water
11046
11122
+
Arg
ACG
[ENA]
¢þ
>WENV182570734
OJFF01000081
[OJFF] seawater metagenome; Sea water
1231
1307
+
Arg
ACG
[ENA]
¢þ
>WENV182570790
OJFF01000923
[OJFF] seawater metagenome; Sea water
668
592
-
Arg
ACG
[ENA]
¢þ
>WENV182571496
OJFK01000148
[OJFK] seawater metagenome; Sea water
11177
11253
+
Arg
ACG
[ENA]
¢þ
>WENV182571499
OJFK01000172
[OJFK] seawater metagenome; Sea water
6320
6244
-
Arg
ACG
[ENA]
¢þ
>WENV182578376
OJGN01002042
[OJGN] seawater metagenome; Sea water
537
461
-
Arg
ACG
[ENA]
¢þ
>WENV182583847
OJHF01000112
[OJHF] seawater metagenome; Sea water
13628
13552
-
Arg
ACG
[ENA]
¢þ
>WENV182587142
OJHL01003215
[OJHL] seawater metagenome; Sea water
679
755
+
Arg
ACG
[ENA]
¢þ
>WENV182589510
OJID01008302
[OJID] seawater metagenome; Sea water
125
49
-
Arg
ACG
[ENA]
¢þ
>WENV182589702
OJIG01000038
[OJIG] seawater metagenome; Sea water
10981
11057
+
Arg
ACG
[ENA]
¢þ
>WENV182589810
OJIG01001079
[OJIG] seawater metagenome; Sea water
1832
1908
+
Arg
ACG
[ENA]
¢þ
>WENV182592139
OJIQ01000329
[OJIQ] seawater metagenome; Sea water
3587
3663
+
Arg
ACG
[ENA]
¢þ
>WENV182594303
OJIV01003533
[OJIV] seawater metagenome; Sea water
31
107
+
Arg
ACG
[ENA]
¢þ
>WENV183056018
OLHH01021494
[OLHH] seawater metagenome; Sea water
587
663
+
Arg
ACG
[ENA]
¢þ
>WENV183058458
OLHR01000137
[OLHR] seawater metagenome; Sea water
16599
16523
-
Arg
ACG
[ENA]
¢þ
>WENV183060392
OLHX01007171
[OLHX] seawater metagenome; Sea water
698
622
-
Arg
ACG
[ENA]
¢þ
>WENV183061277
OLHZ01002549
[OLHZ] seawater metagenome; Sea water
1836
1760
-
Arg
ACG
[ENA]
¢þ
>WENV183619055
OOFP01020849
[OOFP] marine metagenome; seawater
549
473
-
Arg
ACG
[ENA]
¢þ
>WENV183619113
OOFP01028407
[OOFP] marine metagenome; seawater
544
468
-
Arg
ACG
[ENA]
¢þ
>WENV183619312
OOFQ01000890
[OOFQ] marine metagenome; seawater
3310
3234
-
Arg
ACG
[ENA]
¢þ
>WENV183620384
OOFR01046305
[OOFR] marine metagenome; seawater
520
444
-
Arg
ACG
[ENA]
¢þ
>WENV183621638
OOFU01020771
[OOFU] marine metagenome; sea ice
506
430
-
Arg
ACG
[ENA]
¢þ
>WENV183625090
OOGF01000546
[OOGF] marine metagenome; seawater
3046
3122
+
Arg
ACG
[ENA]
¢þ
>WENV183626841
OOGK01003863
[OOGK] marine metagenome; seawater
552
628
+
Arg
ACG
[ENA]
¢þ
>WENV183629044
OOGP01001793
[OOGP] marine metagenome; seawater
1366
1442
+
Arg
ACG
[ENA]
¢þ
>WENV183630142
OOGR01025325
[OOGR] marine metagenome; seawater
118
194
+
Arg
ACG
[ENA]
¢þ
>WENV183630377
OOGS01007534
[OOGS] marine metagenome; seawater
723
647
-
Arg
ACG
[ENA]
¢þ
>WENV170325606
CEST01034302
[CEST] marine metagenome genome assembly TARA_085_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1031
1107
+
Arg
ACG
[ENA]
¢þ
>WENV170537778
CEWR01027860
[CEWR] marine metagenome genome assembly TARA_085_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
154
78
-
Arg
ACG
[ENA]
¢þ
>WENV170567520
FLMP01001505
[FLMP] seawater metagenome; seawater
6276
6352
+
Arg
ACG
[ENA]
¢þ
>WENV170568261
FLMP01025717
[FLMP] seawater metagenome; seawater
875
799
-
Arg
ACG
[ENA]
¢þ
>WENV170568289
FLMP01027794
[FLMP] seawater metagenome; seawater
107
183
+
Arg
ACG
[ENA]
¢þ
>WENV170569068
FLMP01117234
[FLMP] seawater metagenome; seawater
752
676
-
Arg
ACG
[ENA]
¢þ
>WENV170599198
FUWD010066587
[FUWD] metagenome; unknown
289
213
-
Arg
ACG
[ENA]
¢þ
>WENV170613208
FUWD012789703
[FUWD] metagenome; unknown
228
304
+
Arg
ACG
[ENA]
¢þ
>WENV170820492
MDSY01005666
[MDSY] marine metagenome; seawater
12195
12271
+
Arg
ACG
[ENA]
¢þ
>WENV170821076
MDSY01015826
[MDSY] marine metagenome; seawater
15
91
+
Arg
ACG
[ENA]
¢þ
>WENV170950316
MEHZ011490453
[MEHZ] marine metagenome; marine surface water
213
289
+
Arg
ACG
[ENA]
¢þ
>WENV170953156
MEHZ011631536
[MEHZ] marine metagenome; marine surface water
1161
1237
+
Arg
ACG
[ENA]
¢þ
>WENV170953292
MEHZ011638839
[MEHZ] marine metagenome; marine surface water
15
91
+
Arg
ACG
[ENA]
¢þ
>WENV170953401
MEHZ011643560
[MEHZ] marine metagenome; marine surface water
81
5
-
Arg
ACG
[ENA]
¢þ
>WENV170953526
MEHZ011650684
[MEHZ] marine metagenome; marine surface water
770
694
-
Arg
ACG
[ENA]
¢þ
>ENV09003948
ADIF01001445
Marine metagenome apSum_C1
1175
1251
+
Arg
ACG
[ENA]
¡û
>ENV09003962
ADIF01003780
Marine metagenome apSum_C1
660
584
-
Arg
ACG
[ENA]
¡û
>W1511576964
LAQF01000025
Gammaproteobacteria
Oceanospirillaceae bacterium ASP10-02a [LAQF]
58754
58830
+
Arg
ACG
[ENA]
¡û
>W1511576981
LAQF01000066
Gammaproteobacteria
Oceanospirillaceae bacterium ASP10-02a [LAQF]
12194
12270
+
Arg
ACG
[ENA]
¡û
Identical group No.285389 (4 seq.)
>WENV180383703
OBOV01009178
[OBOV] marine metagenome; ENV:00002010
658
734
+
Arg
ACG
[ENA]
¢þ
>WENV180396479
OBPV01008180
[OBPV] marine metagenome; ENVO:00002010
482
558
+
Arg
ACG
[ENA]
¢þ
>WENV170307012
CESJ01105531
[CESJ] marine metagenome genome assembly TARA_084_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
271
195
-
Arg
ACG
[ENA]
¢þ
>ENV09003965
ADIF01004113
Marine metagenome apSum_C1
516
440
-
Arg
ACG
[ENA]
¡û
Identical group No.286011 (7 seq.)
>WENV180594060
OCOY01022873
[OCOY] marine metagenome; ENVO:00002010
597
521
-
Arg
ACG
[ENA]
¢þ
>WENV181323109
OFKW01006930
[OFKW] marine metagenome; sea ice
99
175
+
Arg
ACG
[ENA]
¢þ
>WENV182565031
OJEF01031587
[OJEF] seawater metagenome; Sea water
363
439
+
Arg
ACG
[ENA]
¢þ
>WENV182584309
OJHF01046916
[OJHF] seawater metagenome; Sea water
398
474
+
Arg
ACG
[ENA]
¢þ
>WENV182585032
OJHH01000354
[OJHH] seawater metagenome; Sea water
13190
13266
+
Arg
ACG
[ENA]
¢þ
>ENV09003928
ADIF01000058
Marine metagenome apSum_C1
177
253
+
Arg
ACG
[ENA]
¡û
>W1710568018
FOTF01000011
Alphaproteobacteria
Loktanella salsilacus [FOTF]
114275
114199
-
Arg
ACG
[ENA]
¡û
Identical group No.345202 (9 seq.)
>WENV183615269
OOEB01000498
[OOEB] marine metagenome; sea ice
388
312
-
Arg
ACG
[ENA]
¢þ
>WENV183616834
OOEE01003402
[OOEE] marine metagenome; sea ice
736
812
+
Arg
ACG
[ENA]
¢þ
>WENV183617476
OOEG01000748
[OOEG] marine metagenome; sea ice
2888
2964
+
Arg
ACG
[ENA]
¢þ
>WENV183621412
OOFU01000423
[OOFU] marine metagenome; sea ice
494
418
-
Arg
ACG
[ENA]
¢þ
>WENV183624281
OOGD01000177
[OOGD] marine metagenome; sea ice
726
650
-
Arg
ACG
[ENA]
¢þ
>WENV183625861
OOGG01056888
[OOGG] marine metagenome; sea ice
376
452
+
Arg
ACG
[ENA]
¢þ
>WENV183628840
OOGO01036841
[OOGO] marine metagenome; sea ice
170
246
+
Arg
ACG
[ENA]
¢þ
>SRA1052965
SRR035098.309181
454 Sequencing (SRP001819)
241
165
-
Arg
ACG
[SRA]
>ENV09003960
ADIF01003207
Marine metagenome apSum_C1
279
203
-
Arg
ACG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK