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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Marine metagenome apSum_C1
Anticodon = CAG
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.155458 (10 seq.)
>WENV180110063
OAPL01079484
[OAPL] marine metagenome; ENVO:00002010 for 'seawater
190
275
+
Leu
CAG
[ENA]
¢þ
>WENV180356644
OBNL01003427
[OBNL] marine metagenome; ENVO:00002010
213
128
-
Leu
CAG
[ENA]
¢þ
>WENV180383208
OBOU01010346
[OBOU] marine metagenome; ENV:00002010
895
810
-
Leu
CAG
[ENA]
¢þ
>WENV180383722
OBOV01011690
[OBOV] marine metagenome; ENV:00002010
414
499
+
Leu
CAG
[ENA]
¢þ
>WENV180396534
OBPV01015424
[OBPV] marine metagenome; ENVO:00002010
492
577
+
Leu
CAG
[ENA]
¢þ
>WENV181325471
OFLJ01001219
[OFLJ] seawater metagenome; seawater
2757
2842
+
Leu
CAG
[ENA]
¢þ
>WENV182589965
OJIG01019116
[OJIG] seawater metagenome; Sea water
256
171
-
Leu
CAG
[ENA]
¢þ
>WENV183619324
OOFQ01001204
[OOFQ] marine metagenome; seawater
2757
2842
+
Leu
CAG
[ENA]
¢þ
>WENV183620173
OOFR01011499
[OOFR] marine metagenome; seawater
642
557
-
Leu
CAG
[ENA]
¢þ
>ENV09003985
ADIF01007616
Marine metagenome apSum_C1
159
74
-
Leu
CAG
[ENA]
¡û
Identical group No.163704 (6 seq.)
>WENV182578877
OJGP01010886
[OJGP] seawater metagenome; Sea water
510
595
+
Leu
CAG
[ENA]
¢þ
>WENV182585241
OJHH01004628
[OJHH] seawater metagenome; Sea water
86
1
-
Leu
CAG
[ENA]
¢þ
>WENV183056816
OLHJ01024847
[OLHJ] seawater metagenome; Sea water
613
528
-
Leu
CAG
[ENA]
¢þ
>WENV183062474
OLID01018561
[OLID] seawater metagenome; Sea water
763
678
-
Leu
CAG
[ENA]
¢þ
>WENV170569242
FLMP01155422
[FLMP] seawater metagenome; seawater
134
49
-
Leu
CAG
[ENA]
¢þ
>ENV09003973
ADIF01004955
Marine metagenome apSum_C1
258
343
+
Leu
CAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK