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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Marine metagenome apSum_C1
Anticodon = GAG
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.156404 (15 seq.)
>WENV180109978
OAPL01023812
[OAPL] marine metagenome; ENVO:00002010 for 'seawater
69
154
+
Leu
GAG
[ENA]
¢þ
>WENV180590603
OCOT01095066
[OCOT] marine metagenome; ENVO:00002010
156
71
-
Leu
GAG
[ENA]
¢þ
>WENV181392249
OFRW01015583
[OFRW] seawater metagenome; seawater
213
298
+
Leu
GAG
[ENA]
¢þ
>WENV182548130
OJBV01000608
[OJBV] seawater metagenome; Sea water
480
395
-
Leu
GAG
[ENA]
¢þ
>WENV182563595
OJEC01005640
[OJEC] seawater metagenome; Sea water
1423
1508
+
Leu
GAG
[ENA]
¢þ
>WENV182570959
OJFF01020686
[OJFF] seawater metagenome; Sea water
123
38
-
Leu
GAG
[ENA]
¢þ
>WENV183058570
OLHR01001384
[OLHR] seawater metagenome; Sea water
5477
5562
+
Leu
GAG
[ENA]
¢þ
>WENV183626960
OOGK01015432
[OOGK] marine metagenome; seawater
213
298
+
Leu
GAG
[ENA]
¢þ
>WENV170297269
CESE01132004
[CESE] marine metagenome genome assembly TARA_085_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
339
424
+
Leu
GAG
[ENA]
¢þ
>WENV170325194
CEST01002405
[CEST] marine metagenome genome assembly TARA_085_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
213
128
-
Leu
GAG
[ENA]
¢þ
>WENV170567194
FLLY01077906
[FLLY] seawater metagenome; seawater
436
351
-
Leu
GAG
[ENA]
¢þ
>WENV170568323
FLMP01030180
[FLMP] seawater metagenome; seawater
867
782
-
Leu
GAG
[ENA]
¢þ
>WENV170623141
FUWD013138173
[FUWD] metagenome; unknown
412
327
-
Leu
GAG
[ENA]
¢þ
>WENV170631395
FUWD013350668
[FUWD] metagenome; unknown
412
327
-
Leu
GAG
[ENA]
¢þ
>ENV09003936
ADIF01000419
Marine metagenome apSum_C1
608
523
-
Leu
GAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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