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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Marine metagenome apSum_C1
Anticodon = GGC
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.533908 (14 seq.)
>WENV180282580
OBIC01000230
[OBIC] beach sand metagenome; beach sand
9777
9702
-
Ala
GGC
[ENA]
¢þ
>WENV180293586
OBIY01000144
[OBIY] beach sand metagenome; beach sand
8756
8831
+
Ala
GGC
[ENA]
¢þ
>WENV182566148
OJEJ01000228
[OJEJ] seawater metagenome; Sea water
1761
1836
+
Ala
GGC
[ENA]
¢þ
>WENV183615322
OOEB01003241
[OOEB] marine metagenome; sea ice
764
689
-
Ala
GGC
[ENA]
¢þ
>WENV183616847
OOEE01003998
[OOEE] marine metagenome; sea ice
589
514
-
Ala
GGC
[ENA]
¢þ
>WENV183621480
OOFU01002530
[OOFU] marine metagenome; sea ice
338
263
-
Ala
GGC
[ENA]
¢þ
>WENV183622999
OOFX01001069
[OOFX] marine metagenome; sea ice
2402
2477
+
Ala
GGC
[ENA]
¢þ
>WENV183623515
OOGA01006238
[OOGA] marine metagenome; sea ice
1159
1234
+
Ala
GGC
[ENA]
¢þ
>WENV183624344
OOGD01001936
[OOGD] marine metagenome; sea ice
250
175
-
Ala
GGC
[ENA]
¢þ
>WENV183628150
OOGM01029398
[OOGM] marine metagenome; sea ice
290
365
+
Ala
GGC
[ENA]
¢þ
>WENV183628359
OOGN01018879
[OOGN] marine metagenome; sea ice
531
606
+
Ala
GGC
[ENA]
¢þ
>WENV183631227
OOGU01053974
[OOGU] marine metagenome; sea ice
548
623
+
Ala
GGC
[ENA]
¢þ
>WENV170647003
JQIA01007710
[JQIA] marine sediment metagenome; oil-polluted sediment collected from 3 locations (0.5 km, 0.7 km and 0.9 km) around wellhead
5299
5374
+
Ala
GGC
[ENA]
¢þ
>ENV09003929
ADIF01000082
Marine metagenome apSum_C1
696
771
+
Ala
GGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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