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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Marine metagenome apSum_C1
Anticodon = GGG
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.322378 (7 seq.)
>WENV182547561
OJBS01031781
[OJBS] seawater metagenome; Sea water
376
300
-
Pro
GGG
[ENA]
¢þ
>WENV170783032
MAAC01013192
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
2301
2377
+
Pro
GGG
[ENA]
¢þ
>W1910443185
FWFW01000002
Alphaproteobacteria
Pacificibacter marinus CECT 7971 [FWFW]
65413
65489
+
Pro
GGG
[ENA]
¡û
>W1910547118
FZNN01000011
Alphaproteobacteria
Puniceibacterium sediminis DSM 29052 [FZNN]
142958
142882
-
Pro
GGG
[ENA]
¡û
>W1810735817
QOLB01000137
Alphaproteobacteria
Candidatus Halocynthiibacter alkanivorans Bin25-node5 [QOLB]
51657
51581
-
Pro
GGG
[ENA]
¡û
>ENV09003966
ADIF01004246
Marine metagenome apSum_C1
57
133
+
Pro
GGG
[ENA]
¡û
>W1710543302
FNZV01000017
Alphaproteobacteria
Pacificibacter marinus [FNZV]
65381
65457
+
Pro
GGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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