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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Marine metagenome apSum_C1
Anticodon = GGT
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.656970 (20 seq.)
>W1711621212
MPCW01000005
Bacteroidota
Flavobacterium sp. MedPE-SWcel [MPCW]
64093
64019
-
Thr
GGT
[ENA]
¡û
>W1711621258
MPCX01000015
Bacteroidota
Lacinutrix sp. MedPE-SW [MPCX]
18758
18684
-
Thr
GGT
[ENA]
¡û
>C171092565
CP019352
Bacteroidota
Lacinutrix venerupis DOK2-8 [CP019352]
2530665
2530591
-
Thr
GGT
-
¡û
>WENV180383736
OBOV01014332
[OBOV] marine metagenome; ENV:00002010
726
654
-
Thr
GGT
[ENA]
¢þ
>WENV180384519
OBOY01000800
[OBOY] marine metagenome; Sterile flask
404
476
+
Thr
GGT
[ENA]
¢þ
>WENV182591262
OJIL01006707
[OJIL] seawater metagenome; Sea water
212
284
+
Thr
GGT
[ENA]
¢þ
>WENV170531052
CEWK01089342
[CEWK] marine metagenome genome assembly TARA_132_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
173
245
+
Thr
GGT
[ENA]
¢þ
>WENV170786297
MDSV01000962
[MDSV] marine metagenome; seawater
43
115
+
Thr
GGT
[ENA]
¢þ
>WENV170803275
MDSW01027582
[MDSW] marine metagenome; seawater
102
176
+
Thr
GGT
[ENA]
¢þ
>WENV170876036
MDTC01033861
[MDTC] marine metagenome; seawater
30509
30437
-
Thr
GGT
[ENA]
¢þ
>WENV170893635
MDTD01054502
[MDTD] marine metagenome; seawater
4072
3998
-
Thr
GGT
[ENA]
¢þ
>C181113353
CP025118
Bacteroidota
Lacinutrix sp. Bg11-31 [CP025118]
259739
259811
+
Thr
GGT
-
¡û
>ENV09001813
ACQI01010932
Hydrothermal vent metagenome LCHCB.C1
134
206
+
Thr
GGT
[ENA]
¡û
>ENV09003970
ADIF01004328
Marine metagenome apSum_C1
545
471
-
Thr
GGT
[ENA]
¡û
>C11111982
CP002825
Bacteroidota
Lacinutrix sp. 5H-3-7-4 [CP002825]
2052784
2052858
+
Thr
GGT
[Ensembl]
¡û
>W11152631
AEYR01000006
Bacteroidota
Lacinutrix sp. 5H-3-7-4 5H-3-7-4 [AEYR]
19657
19583
-
Thr
GGT
[ENA]
¡û
>W1610632951
LIQG01000027
Bacteroidota
Lacinutrix mariniflava [LIQG]
319342
319416
+
Thr
GGT
[ENA]
¡û
>W1610632969
LIQH01000023
Bacteroidota
Lacinutrix algicola [LIQH]
19121
19047
-
Thr
GGT
[ENA]
¡û
>W1710767383
LIQG01000027
Bacteroidota
Lacinutrix mariniflava [LIQG]
319342
319416
+
Thr
GGT
[ENA]
¡û
>W1710767401
LIQH01000023
Bacteroidota
Lacinutrix algicola [LIQH]
19121
19047
-
Thr
GGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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