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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Marine metagenome apSum_C1
Anticodon = GTT
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.686163 (14 seq.)
>WENV182558285
OJDL01031908
[OJDL] seawater metagenome; Sea water
503
577
+
Asn
GTT
[ENA]
¢þ
>WENV182584992
OJHH01000030
[OJHH] seawater metagenome; Sea water
4069
3995
-
Asn
GTT
[ENA]
¢þ
>WENV182591098
OJIK01026089
[OJIK] seawater metagenome; Sea water
516
590
+
Asn
GTT
[ENA]
¢þ
>WENV183628847
OOGO01039812
[OOGO] marine metagenome; sea ice
157
83
-
Asn
GTT
[ENA]
¢þ
>WENV170692762
LGOV01027320
[LGOV] marine sediment metagenome; sample #5579, elevator 3A push core 41 containing 12 cm of sediment, collected at Hydrate Ridge
1130
1204
+
Asn
GTT
[ENA]
¢þ
>WENV170692977
LGOV01055316
[LGOV] marine sediment metagenome; sample #5579, elevator 3A push core 41 containing 12 cm of sediment, collected at Hydrate Ridge
520
594
+
Asn
GTT
[ENA]
¢þ
>WENV170696087
LGVE01214553
[LGVE] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
526
452
-
Asn
GTT
[ENA]
¢þ
>WENV170699738
LGVF01641973
[LGVF] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
230
304
+
Asn
GTT
[ENA]
¢þ
>WENV170782301
MAAC01009671
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
294496
294422
-
Asn
GTT
[ENA]
¢þ
>SRA1051942
SRR035098.110417
454 Sequencing (SRP001819)
26
100
+
Asn
GTT
[SRA]
>SRA1052444
SRR035098.205094
454 Sequencing (SRP001819)
26
100
+
Asn
GTT
[SRA]
>SRA1052717
SRR035098.260179
454 Sequencing (SRP001819)
26
100
+
Asn
GTT
[SRA]
>SRA1052770
SRR035098.272123
454 Sequencing (SRP001819)
26
100
+
Asn
GTT
[SRA]
>ENV09003983
ADIF01007103
Marine metagenome apSum_C1
150
224
+
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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