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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Marine metagenome apSum_C1
Anticodon = TTC
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.345208 (14 seq.)
>WENV180591994
OCOV01158921
[OCOV] marine metagenome; ENVO:01000301
216
140
-
Glu
TTC
[ENA]
¢þ
>WENV182566149
OJEJ01000228
[OJEJ] seawater metagenome; Sea water
1871
1947
+
Glu
TTC
[ENA]
¢þ
>WENV183615323
OOEB01003241
[OOEB] marine metagenome; sea ice
655
579
-
Glu
TTC
[ENA]
¢þ
>WENV183616848
OOEE01003998
[OOEE] marine metagenome; sea ice
480
404
-
Glu
TTC
[ENA]
¢þ
>WENV183621481
OOFU01002530
[OOFU] marine metagenome; sea ice
229
153
-
Glu
TTC
[ENA]
¢þ
>WENV183623000
OOFX01001069
[OOFX] marine metagenome; sea ice
2511
2587
+
Glu
TTC
[ENA]
¢þ
>WENV183624345
OOGD01001936
[OOGD] marine metagenome; sea ice
141
65
-
Glu
TTC
[ENA]
¢þ
>WENV183628151
OOGM01029398
[OOGM] marine metagenome; sea ice
399
475
+
Glu
TTC
[ENA]
¢þ
>WENV183628360
OOGN01018879
[OOGN] marine metagenome; sea ice
640
716
+
Glu
TTC
[ENA]
¢þ
>WENV183631228
OOGU01053974
[OOGU] marine metagenome; sea ice
657
733
+
Glu
TTC
[ENA]
¢þ
>WENV170647004
JQIA01007710
[JQIA] marine sediment metagenome; oil-polluted sediment collected from 3 locations (0.5 km, 0.7 km and 0.9 km) around wellhead
5398
5474
+
Glu
TTC
[ENA]
¢þ
>ENV09003930
ADIF01000082
Marine metagenome apSum_C1
794
870
+
Glu
TTC
[ENA]
¡û
>WENV074616
AACY023985928
Marine microbial communities from Global Ocean Sampling (GOS)
514
436
-
Glu
TTC
[ENA]
>WENV079080
AASZ01000103
Olavius algarvensis microbiome from Mediterranean sea
11817
11895
+
Glu
TTC
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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