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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Marine metagenome apWin_C1
Anticodon = CAC
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.1708 (11 seq.)
>WENV180055500
MPLV02164451
[MPLV] marine metagenome; 100 m water sample filtered on 0.2 um supor filter
3563
3658
+
Val
CAC
[ENA]
¢þ
>WENV181306986
OFIO01006525
[OFIO] marine metagenome; seawater
100
194
+
Val
CAC
[ENA]
¢þ
>WENV181317133
OFJX01002236
[OFJX] marine metagenome; seawater
910
1004
+
Val
CAC
[ENA]
¢þ
>WENV181320191
OFKG01001922
[OFKG] marine metagenome; seawater
655
561
-
Val
CAC
[ENA]
¢þ
>WENV183806540
PVBE011126434
[PVBE] marine metagenome; water
3564
3659
+
Val
CAC
[ENA]
¢þ
>WENV170294615
CESC01094398
[CESC] marine metagenome genome assembly TARA_078_MES_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1859
1953
+
Val
CAC
[ENA]
¢þ
>WENV170478366
CEVK01039955
[CEVK] marine metagenome genome assembly TARA_149_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
311
405
+
Val
CAC
[ENA]
¢þ
>WENV170566708
FLLY01000222
[FLLY] seawater metagenome; seawater
2580
2674
+
Val
CAC
[ENA]
¢þ
>WENV170763737
LWDU01018132
[LWDU] hydrothermal vent metagenome; deep sea hydrothermal plume seawater
2942
3036
+
Val
CAC
[ENA]
¢þ
>ENV09004374
ADKQ01010177
Marine metagenome apWin_C1
602
696
+
Val
CAC
[ENA]
¡û
>W1610599352
LFLC01000041
Nitrososphaerota
Nitrosopumilus sp. LS_AOA [LFLC]
52621
52715
+
Val
CAC
[ENA]
¡û
Identical group No.528420 (1 seq.)
>ENV09004376
ADKQ01010222
Marine metagenome apWin_C1
354
281
-
Val
CAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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