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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Marine metagenome apWin_C1
Anticodon = CCT
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.278528 (53 seq.)
>WENV180367458
OBOE01096237
[OBOE] marine metagenome; ENVO:00002010
169
93
-
Arg
CCT
[ENA]
¢þ
>WENV181309364
OFIV01007767
[OFIV] marine metagenome; seawater
500
424
-
Arg
CCT
[ENA]
¢þ
>WENV181313916
OFJH01026374
[OFJH] marine metagenome; seawater
15
91
+
Arg
CCT
[ENA]
¢þ
>WENV181315505
OFJP01000840
[OFJP] marine metagenome; seawater
1138
1062
-
Arg
CCT
[ENA]
¢þ
>WENV181318750
OFKA01015084
[OFKA] marine metagenome; seawater
144
68
-
Arg
CCT
[ENA]
¢þ
>WENV181320620
OFKI01002367
[OFKI] marine metagenome; seawater
1082
1006
-
Arg
CCT
[ENA]
¢þ
>WENV181321654
OFKN01000405
[OFKN] marine metagenome; seawater
265
341
+
Arg
CCT
[ENA]
¢þ
>WENV181323254
OFKX01001792
[OFKX] marine metagenome; seawater
36
112
+
Arg
CCT
[ENA]
¢þ
>WENV181325640
OFLJ01010401
[OFLJ] seawater metagenome; seawater
638
714
+
Arg
CCT
[ENA]
¢þ
>WENV181390837
OFRQ01000392
[OFRQ] seawater metagenome; seawater
124
200
+
Arg
CCT
[ENA]
¢þ
>WENV181392062
OFRW01000058
[OFRW] seawater metagenome; seawater
51
127
+
Arg
CCT
[ENA]
¢þ
>WENV181392090
OFRW01000499
[OFRW] seawater metagenome; seawater
2827
2751
-
Arg
CCT
[ENA]
¢þ
>WENV181392149
OFRW01005142
[OFRW] seawater metagenome; seawater
1198
1274
+
Arg
CCT
[ENA]
¢þ
>WENV181393223
OFRX01077799
[OFRX] seawater metagenome; seawater
516
440
-
Arg
CCT
[ENA]
¢þ
>WENV182548081
OJBV01000135
[OJBV] seawater metagenome; Sea water
8792
8868
+
Arg
CCT
[ENA]
¢þ
>WENV182550555
OJCA01009570
[OJCA] seawater metagenome; Sea water
59
135
+
Arg
CCT
[ENA]
¢þ
>WENV182554405
OJCU01003369
[OJCU] seawater metagenome; Sea water
1174
1098
-
Arg
CCT
[ENA]
¢þ
>WENV182563625
OJEC01007927
[OJEC] seawater metagenome; Sea water
673
597
-
Arg
CCT
[ENA]
¢þ
>WENV182565005
OJEF01026311
[OJEF] seawater metagenome; Sea water
826
750
-
Arg
CCT
[ENA]
¢þ
>WENV182565283
OJEH01001513
[OJEH] seawater metagenome; Sea water
995
1071
+
Arg
CCT
[ENA]
¢þ
>WENV182569532
OJEZ01005962
[OJEZ] seawater metagenome; Sea water
512
436
-
Arg
CCT
[ENA]
¢þ
>WENV182570374
OJFC01003660
[OJFC] seawater metagenome; Sea water
597
673
+
Arg
CCT
[ENA]
¢þ
>WENV182571762
OJFK01009692
[OJFK] seawater metagenome; Sea water
380
456
+
Arg
CCT
[ENA]
¢þ
>WENV182573943
OJFQ01003951
[OJFQ] seawater metagenome; Sea water
643
719
+
Arg
CCT
[ENA]
¢þ
>WENV182584153
OJHF01015674
[OJHF] seawater metagenome; Sea water
484
408
-
Arg
CCT
[ENA]
¢þ
>WENV182587067
OJHL01000159
[OJHL] seawater metagenome; Sea water
2691
2767
+
Arg
CCT
[ENA]
¢þ
>WENV182589476
OJID01005882
[OJID] seawater metagenome; Sea water
294
370
+
Arg
CCT
[ENA]
¢þ
>WENV182590152
OJIH01001191
[OJIH] seawater metagenome; Sea water
1152
1076
-
Arg
CCT
[ENA]
¢þ
>WENV182592163
OJIQ01000863
[OJIQ] seawater metagenome; Sea water
2197
2273
+
Arg
CCT
[ENA]
¢þ
>WENV182594372
OJIV01005669
[OJIV] seawater metagenome; Sea water
2140
2216
+
Arg
CCT
[ENA]
¢þ
>WENV183057897
OLHM01018894
[OLHM] seawater metagenome; Sea water
164
88
-
Arg
CCT
[ENA]
¢þ
>WENV183058184
OLHN01017008
[OLHN] seawater metagenome; Sea water
118
194
+
Arg
CCT
[ENA]
¢þ
>WENV183058751
OLHR01007785
[OLHR] seawater metagenome; Sea water
1061
985
-
Arg
CCT
[ENA]
¢þ
>WENV183061415
OLHZ01008273
[OLHZ] seawater metagenome; Sea water
472
548
+
Arg
CCT
[ENA]
¢þ
>WENV183619499
OOFQ01010471
[OOFQ] marine metagenome; seawater
638
714
+
Arg
CCT
[ENA]
¢þ
>WENV183621566
OOFU01007583
[OOFU] marine metagenome; sea ice
18
94
+
Arg
CCT
[ENA]
¢þ
>WENV183621954
OOFV01001260
[OOFV] marine metagenome; seawater
2829
2753
-
Arg
CCT
[ENA]
¢þ
>WENV183623836
OOGB01000654
[OOGB] marine metagenome; sea ice
195
271
+
Arg
CCT
[ENA]
¢þ
>WENV183625200
OOGF01003729
[OOGF] marine metagenome; seawater
1500
1576
+
Arg
CCT
[ENA]
¢þ
>WENV183625943
OOGH01000401
[OOGH] marine metagenome; seawater
129
205
+
Arg
CCT
[ENA]
¢þ
>WENV183626339
OOGI01000110
[OOGI] marine metagenome; seawater
3438
3362
-
Arg
CCT
[ENA]
¢þ
>WENV183626773
OOGK01000069
[OOGK] marine metagenome; seawater
9490
9414
-
Arg
CCT
[ENA]
¢þ
>WENV183626806
OOGK01001128
[OOGK] marine metagenome; seawater
2137
2061
-
Arg
CCT
[ENA]
¢þ
>WENV183626861
OOGK01005344
[OOGK] marine metagenome; seawater
1198
1274
+
Arg
CCT
[ENA]
¢þ
>WENV183629595
OOGP01081043
[OOGP] marine metagenome; seawater
516
440
-
Arg
CCT
[ENA]
¢þ
>WENV183630215
OOGS01000060
[OOGS] marine metagenome; seawater
8931
9007
+
Arg
CCT
[ENA]
¢þ
>WENV183630797
OOGU01002688
[OOGU] marine metagenome; sea ice
2315
2239
-
Arg
CCT
[ENA]
¢þ
>WENV170567517
FLMP01001438
[FLMP] seawater metagenome; seawater
3649
3725
+
Arg
CCT
[ENA]
¢þ
>WENV170567990
FLMP01012197
[FLMP] seawater metagenome; seawater
51
127
+
Arg
CCT
[ENA]
¢þ
>WENV170824427
MDSY01075825
[MDSY] marine metagenome; seawater
4151
4227
+
Arg
CCT
[ENA]
¢þ
>WENV170950774
MEHZ011517152
[MEHZ] marine metagenome; marine surface water
3712
3636
-
Arg
CCT
[ENA]
¢þ
>WENV170950840
MEHZ011521074
[MEHZ] marine metagenome; marine surface water
1334
1410
+
Arg
CCT
[ENA]
¢þ
>ENV09004288
ADKQ01002616
Marine metagenome apWin_C1
660
736
+
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK