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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Marine metagenome apWin_C1
Anticodon = CGA
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.15094 (1 seq.)
>ENV09004273
ADKQ01000542
Marine metagenome apWin_C1
307
399
+
Ser
CGA
[ENA]
¡û
Identical group No.163109 (5 seq.)
>WENV180367475
OBOE01103639
[OBOE] marine metagenome; ENVO:00002010
149
65
-
Ser
CGA
[ENA]
¢þ
>WENV183621924
OOFV01000801
[OOFV] marine metagenome; seawater
3524
3608
+
Ser
CGA
[ENA]
¢þ
>WENV170764384
LWDU01032127
[LWDU] hydrothermal vent metagenome; deep sea hydrothermal plume seawater
9601
9516
-
Ser
CGA
[ENA]
¢þ
>WENV170952282
MEHZ011591375
[MEHZ] marine metagenome; marine surface water
232
147
-
Ser
CGA
[ENA]
¢þ
>ENV09004328
ADKQ01006429
Marine metagenome apWin_C1
159
74
-
Ser
CGA
[ENA]
¡û
Identical group No.193097 (5 seq.)
>WENV181307084
OFIO01016403
[OFIO] marine metagenome; seawater
401
318
-
Ser
CGA
[ENA]
¢þ
>WENV170300293
CESG01111766
[CESG] marine metagenome genome assembly TARA_078_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
297
215
-
Ser
CGA
[ENA]
¢þ
>WENV170378900
CETV01062624
[CETV] marine metagenome genome assembly TARA_133_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
197
114
-
Ser
CGA
[ENA]
¢þ
>WENV170617474
FUWD012927128
[FUWD] metagenome; unknown
96
13
-
Ser
CGA
[ENA]
¢þ
>ENV09004391
ADKQ01012545
Marine metagenome apWin_C1
91
174
+
Ser
CGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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