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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Marine metagenome apWin_C1
Anticodon = CGT
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.281143 (17 seq.)
>WENV181320659
OFKI01005932
[OFKI] marine metagenome; seawater
343
416
+
Thr
CGT
[ENA]
¢þ
>WENV181321700
OFKN01001181
[OFKN] marine metagenome; seawater
638
565
-
Thr
CGT
[ENA]
¢þ
>WENV181392459
OFRW01052929
[OFRW] seawater metagenome; seawater
324
397
+
Thr
CGT
[ENA]
¢þ
>WENV182560518
OJDU01003743
[OJDU] seawater metagenome; Sea water
1704
1631
-
Thr
CGT
[ENA]
¢þ
>WENV183616673
OOED01123050
[OOED] marine metagenome; seawater
271
344
+
Thr
CGT
[ENA]
¢þ
>WENV183618197
OOFN01004510
[OOFN] marine metagenome; seawater
638
565
-
Thr
CGT
[ENA]
¢þ
>WENV183626599
OOGJ01001112
[OOGJ] marine metagenome; seawater
360
433
+
Thr
CGT
[ENA]
¢þ
>WENV183627189
OOGK01055353
[OOGK] marine metagenome; seawater
324
397
+
Thr
CGT
[ENA]
¢þ
>WENV183630295
OOGS01001458
[OOGS] marine metagenome; seawater
388
461
+
Thr
CGT
[ENA]
¢þ
>WENV170297499
CESE01155275
[CESE] marine metagenome genome assembly TARA_085_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
127
54
-
Thr
CGT
[ENA]
¢þ
>WENV170571876
FLOH01000351
[FLOH] marine metagenome; water
17909
17836
-
Thr
CGT
[ENA]
¢þ
>WENV170619981
FUWD013023929
[FUWD] metagenome; unknown
539
466
-
Thr
CGT
[ENA]
¢þ
>WENV170628114
FUWD013241957
[FUWD] metagenome; unknown
539
466
-
Thr
CGT
[ENA]
¢þ
>WENV170953797
MEHZ011664133
[MEHZ] marine metagenome; marine surface water
1919
1846
-
Thr
CGT
[ENA]
¢þ
>ENV09004263
ADKQ01000115
Marine metagenome apWin_C1
809
736
-
Thr
CGT
[ENA]
¡û
>WENV11101388
AGBE01002140
Marine metagenome, Gulf of Maine surface waters
40533
40460
-
Thr
CGT
[ENA]
¡û
>W1610625326
LIAL01000013
Nitrososphaerota
Nitrosopumilus sp. BACL13 MAG-121220-bin23 [LIAL]
15676
15603
-
Thr
CGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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