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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Marine metagenome apWin_C1
Anticodon = CTG
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.460092 (14 seq.)
>WENV181391407
OFRT01004878
[OFRT] seawater metagenome; seawater
526
451
-
Gln
CTG
[ENA]
¢þ
>WENV181392705
OFRX01002777
[OFRX] seawater metagenome; seawater
1205
1280
+
Gln
CTG
[ENA]
¢þ
>WENV183618920
OOFP01003980
[OOFP] marine metagenome; seawater
526
451
-
Gln
CTG
[ENA]
¢þ
>WENV183620276
OOFR01021293
[OOFR] marine metagenome; seawater
444
369
-
Gln
CTG
[ENA]
¢þ
>WENV183629062
OOGP01002687
[OOGP] marine metagenome; seawater
1205
1280
+
Gln
CTG
[ENA]
¢þ
>WENV170305172
CESI01120784
[CESI] marine metagenome genome assembly TARA_082_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
910
985
+
Gln
CTG
[ENA]
¢þ
>WENV170328096
CESU01196887
[CESU] marine metagenome genome assembly TARA_082_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
130
205
+
Gln
CTG
[ENA]
¢þ
>WENV170567936
FLMP01010526
[FLMP] seawater metagenome; seawater
1209
1134
-
Gln
CTG
[ENA]
¢þ
>WENV170825406
MDSY01092195
[MDSY] marine metagenome; seawater
5856
5931
+
Gln
CTG
[ENA]
¢þ
>WENV170951739
MEHZ011567244
[MEHZ] marine metagenome; marine surface water
11088
11013
-
Gln
CTG
[ENA]
¢þ
>WENV170953779
MEHZ011663637
[MEHZ] marine metagenome; marine surface water
12
87
+
Gln
CTG
[ENA]
¢þ
>WENV170953796
MEHZ011664031
[MEHZ] marine metagenome; marine surface water
489
414
-
Gln
CTG
[ENA]
¢þ
>WENV170953865
MEHZ011667678
[MEHZ] marine metagenome; marine surface water
1148
1223
+
Gln
CTG
[ENA]
¢þ
>ENV09004394
ADKQ01013288
Marine metagenome apWin_C1
283
358
+
Gln
CTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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