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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Marine metagenome apWin_C1
Anticodon = GAC
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.291483 (48 seq.)
>WENV180101574
OAOV01014386
[OAOV] marine metagenome; ENVO:00002010
400
476
+
Val
GAC
[ENA]
¢þ
>WENV181162893
OEIO01032015
[OEIO] marine metagenome; sea ice
559
483
-
Val
GAC
[ENA]
¢þ
>WENV181309325
OFIV01003553
[OFIV] marine metagenome; seawater
496
572
+
Val
GAC
[ENA]
¢þ
>WENV181309497
OFIW01001772
[OFIW] marine metagenome; seawater
941
1017
+
Val
GAC
[ENA]
¢þ
>WENV181313906
OFJH01024075
[OFJH] marine metagenome; seawater
262
338
+
Val
GAC
[ENA]
¢þ
>WENV181315500
OFJP01000499
[OFJP] marine metagenome; seawater
1583
1659
+
Val
GAC
[ENA]
¢þ
>WENV181321672
OFKN01000589
[OFKN] marine metagenome; seawater
137
61
-
Val
GAC
[ENA]
¢þ
>WENV181323389
OFKX01013399
[OFKX] marine metagenome; seawater
110
186
+
Val
GAC
[ENA]
¢þ
>WENV181325598
OFLJ01007591
[OFLJ] seawater metagenome; seawater
799
875
+
Val
GAC
[ENA]
¢þ
>WENV181390799
OFRQ01000080
[OFRQ] seawater metagenome; seawater
2867
2943
+
Val
GAC
[ENA]
¢þ
>WENV181392105
OFRW01001496
[OFRW] seawater metagenome; seawater
1069
1145
+
Val
GAC
[ENA]
¢þ
>WENV181392928
OFRX01018086
[OFRX] seawater metagenome; seawater
406
330
-
Val
GAC
[ENA]
¢þ
>WENV182541500
OJAT01019555
[OJAT] seawater metagenome; Sea water
426
501
+
Val
GAC
[ENA]
¢þ
>WENV182543347
OJBA01029175
[OJBA] seawater metagenome; Sea water
117
41
-
Val
GAC
[ENA]
¢þ
>WENV182548082
OJBV01000135
[OJBV] seawater metagenome; Sea water
5888
5812
-
Val
GAC
[ENA]
¢þ
>WENV182550726
OJCA01035086
[OJCA] seawater metagenome; Sea water
260
184
-
Val
GAC
[ENA]
¢þ
>WENV182570526
OJFC01017588
[OJFC] seawater metagenome; Sea water
656
732
+
Val
GAC
[ENA]
¢þ
>WENV182570937
OJFF01015734
[OJFF] seawater metagenome; Sea water
251
327
+
Val
GAC
[ENA]
¢þ
>WENV182571830
OJFK01017204
[OJFK] seawater metagenome; Sea water
655
579
-
Val
GAC
[ENA]
¢þ
>WENV182584178
OJHF01018464
[OJHF] seawater metagenome; Sea water
559
483
-
Val
GAC
[ENA]
¢þ
>WENV182587175
OJHL01008923
[OJHL] seawater metagenome; Sea water
471
395
-
Val
GAC
[ENA]
¢þ
>WENV182589582
OJID01018176
[OJID] seawater metagenome; Sea water
426
350
-
Val
GAC
[ENA]
¢þ
>WENV182590215
OJIH01004923
[OJIH] seawater metagenome; Sea water
692
616
-
Val
GAC
[ENA]
¢þ
>WENV182592212
OJIQ01003273
[OJIQ] seawater metagenome; Sea water
784
860
+
Val
GAC
[ENA]
¢þ
>WENV183056001
OLHH01018875
[OLHH] seawater metagenome; Sea water
128
52
-
Val
GAC
[ENA]
¢þ
>WENV183615829
OOEB01169915
[OOEB] marine metagenome; sea ice
143
219
+
Val
GAC
[ENA]
¢þ
>WENV183619457
OOFQ01007644
[OOFQ] marine metagenome; seawater
799
875
+
Val
GAC
[ENA]
¢þ
>WENV183623827
OOGB01000402
[OOGB] marine metagenome; sea ice
426
350
-
Val
GAC
[ENA]
¢þ
>WENV183625512
OOGF01048877
[OOGF] marine metagenome; seawater
257
181
-
Val
GAC
[ENA]
¢þ
>WENV183625911
OOGH01000082
[OOGH] marine metagenome; seawater
2778
2854
+
Val
GAC
[ENA]
¢þ
>WENV183626483
OOGI01013403
[OOGI] marine metagenome; seawater
493
417
-
Val
GAC
[ENA]
¢þ
>WENV183626814
OOGK01001539
[OOGK] marine metagenome; seawater
1069
1145
+
Val
GAC
[ENA]
¢þ
>WENV183629296
OOGP01018248
[OOGP] marine metagenome; seawater
501
577
+
Val
GAC
[ENA]
¢þ
>WENV183629643
OOGQ01000327
[OOGQ] marine metagenome; seawater
2026
2102
+
Val
GAC
[ENA]
¢þ
>WENV183629936
OOGR01000723
[OOGR] marine metagenome; seawater
854
778
-
Val
GAC
[ENA]
¢þ
>WENV183630216
OOGS01000060
[OOGS] marine metagenome; seawater
6023
5947
-
Val
GAC
[ENA]
¢þ
>WENV183630899
OOGU01007982
[OOGU] marine metagenome; sea ice
245
169
-
Val
GAC
[ENA]
¢þ
>WENV170296666
CESE01034418
[CESE] marine metagenome genome assembly TARA_085_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
115
191
+
Val
GAC
[ENA]
¢þ
>WENV170296865
CESE01059171
[CESE] marine metagenome genome assembly TARA_085_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
136
212
+
Val
GAC
[ENA]
¢þ
>WENV170325630
CEST01035414
[CEST] marine metagenome genome assembly TARA_085_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
138
214
+
Val
GAC
[ENA]
¢þ
>WENV170566835
FLLY01006438
[FLLY] seawater metagenome; seawater
95
19
-
Val
GAC
[ENA]
¢þ
>WENV170567518
FLMP01001438
[FLMP] seawater metagenome; seawater
739
663
-
Val
GAC
[ENA]
¢þ
>WENV170569420
FLMP01200885
[FLMP] seawater metagenome; seawater
177
101
-
Val
GAC
[ENA]
¢þ
>WENV170622030
FUWD013084488
[FUWD] metagenome; unknown
3031
3107
+
Val
GAC
[ENA]
¢þ
>WENV170950132
MEHZ011479443
[MEHZ] marine metagenome; marine surface water
4
80
+
Val
GAC
[ENA]
¢þ
>WENV170950182
MEHZ011482409
[MEHZ] marine metagenome; marine surface water
972
1048
+
Val
GAC
[ENA]
¢þ
>WENV170952083
MEHZ011582394
[MEHZ] marine metagenome; marine surface water
4958
4882
-
Val
GAC
[ENA]
¢þ
>ENV09004429
ADKQ01016537
Marine metagenome apWin_C1
496
420
-
Val
GAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK