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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Marine metagenome apWin_C1
Anticodon = GGG
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.251191 (1 seq.)
>ENV09004300
ADKQ01003190
Marine metagenome apWin_C1
490
415
-
Pseudo
GGG
[ENA]
¡û
Identical group No.285387 (30 seq.)
>WENV180101618
OAOV01029337
[OAOV] marine metagenome; ENVO:00002010
378
302
-
Pro
GGG
[ENA]
¢þ
>WENV180113843
OAPR01035558
[OAPR] marine metagenome; seawater
305
229
-
Pro
GGG
[ENA]
¢þ
>WENV180383678
OBOV01005929
[OBOV] marine metagenome; ENV:00002010
808
884
+
Pro
GGG
[ENA]
¢þ
>WENV180396441
OBPV01004744
[OBPV] marine metagenome; ENVO:00002010
511
435
-
Pro
GGG
[ENA]
¢þ
>WENV180590404
OCOT01010796
[OCOT] marine metagenome; ENVO:00002010
410
334
-
Pro
GGG
[ENA]
¢þ
>WENV181325605
OFLJ01008384
[OFLJ] seawater metagenome; seawater
1059
1135
+
Pro
GGG
[ENA]
¢þ
>WENV182541471
OJAT01014219
[OJAT] seawater metagenome; Sea water
529
605
+
Pro
GGG
[ENA]
¢þ
>WENV182543121
OJBA01000360
[OJBA] seawater metagenome; Sea water
127
51
-
Pro
GGG
[ENA]
¢þ
>WENV182548040
OJBV01000026
[OJBV] seawater metagenome; Sea water
29695
29771
+
Pro
GGG
[ENA]
¢þ
>WENV182550315
OJCA01000133
[OJCA] seawater metagenome; Sea water
94
18
-
Pro
GGG
[ENA]
¢þ
>WENV182551266
OJCC01000288
[OJCC] seawater metagenome; Sea water
2352
2276
-
Pro
GGG
[ENA]
¢þ
>WENV182563421
OJEC01000105
[OJEC] seawater metagenome; Sea water
611
535
-
Pro
GGG
[ENA]
¢þ
>WENV182568482
OJEU01003051
[OJEU] seawater metagenome; Sea water
636
712
+
Pro
GGG
[ENA]
¢þ
>WENV182569413
OJEZ01000100
[OJEZ] seawater metagenome; Sea water
5656
5580
-
Pro
GGG
[ENA]
¢þ
>WENV182570296
OJFC01001255
[OJFC] seawater metagenome; Sea water
3511
3587
+
Pro
GGG
[ENA]
¢þ
>WENV182570749
OJFF01000249
[OJFF] seawater metagenome; Sea water
94
18
-
Pro
GGG
[ENA]
¢þ
>WENV182571652
OJFK01003003
[OJFK] seawater metagenome; Sea water
3064
2988
-
Pro
GGG
[ENA]
¢þ
>WENV182578167
OJGM01006883
[OJGM] seawater metagenome; Sea water
399
323
-
Pro
GGG
[ENA]
¢þ
>WENV182583867
OJHF01000243
[OJHF] seawater metagenome; Sea water
14969
15045
+
Pro
GGG
[ENA]
¢þ
>WENV182589700
OJIG01000031
[OJIG] seawater metagenome; Sea water
25789
25865
+
Pro
GGG
[ENA]
¢þ
>WENV182590106
OJIH01000293
[OJIH] seawater metagenome; Sea water
5930
6006
+
Pro
GGG
[ENA]
¢þ
>WENV182594267
OJIV01002472
[OJIV] seawater metagenome; Sea water
4669
4593
-
Pro
GGG
[ENA]
¢þ
>WENV183058604
OLHR01002150
[OLHR] seawater metagenome; Sea water
3966
4042
+
Pro
GGG
[ENA]
¢þ
>WENV183619463
OOFQ01008434
[OOFQ] marine metagenome; seawater
272
196
-
Pro
GGG
[ENA]
¢þ
>WENV170327387
CESU01075758
[CESU] marine metagenome genome assembly TARA_082_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
228
304
+
Pro
GGG
[ENA]
¢þ
>WENV170567491
FLMP01001066
[FLMP] seawater metagenome; seawater
7269
7345
+
Pro
GGG
[ENA]
¢þ
>WENV170622580
FUWD013110903
[FUWD] metagenome; unknown
79
3
-
Pro
GGG
[ENA]
¢þ
>WENV170630795
FUWD013324744
[FUWD] metagenome; unknown
79
3
-
Pro
GGG
[ENA]
¢þ
>WENV170952640
MEHZ011608013
[MEHZ] marine metagenome; marine surface water
2598
2674
+
Pro
GGG
[ENA]
¢þ
>ENV09004296
ADKQ01002969
Marine metagenome apWin_C1
729
653
-
Pro
GGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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