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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Marine metagenome apWin_C1
Anticodon = TGA
HIT:
4 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.23618 (4 seq.)
>WENV181318645
OFKA01004437
[OFKA] marine metagenome; seawater
152
243
+
Ser
TGA
[ENA]
¢þ
>WENV181319097
OFKC01009984
[OFKC] marine metagenome; seawater
545
454
-
Ser
TGA
[ENA]
¢þ
>WENV170483723
CEVM01157559
[CEVM] marine metagenome genome assembly TARA_145_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
312
403
+
Ser
TGA
[ENA]
¢þ
>ENV09004350
ADKQ01007678
Marine metagenome apWin_C1
285
376
+
Ser
TGA
[ENA]
¡û
Identical group No.31381 (3 seq.)
>WENV180115544
OAPT01006506
[OAPT] marine metagenome; seawater
184
94
-
Ser
TGA
[ENA]
¢þ
>WENV180585101
OCOK01002852
[OCOK] marine metagenome; ENVO:00002010
620
530
-
Ser
TGA
[ENA]
¢þ
>ENV09004382
ADKQ01011125
Marine metagenome apWin_C1
173
83
-
Ser
TGA
[ENA]
¡û
Identical group No.96026 (1 seq.)
>ENV09004419
ADKQ01015366
Marine metagenome apWin_C1
678
765
+
Ser
TGA
[ENA]
¡û
Identical group No.159650 (18 seq.)
>WENV180113912
OAPR01051503
[OAPR] marine metagenome; seawater
335
419
+
Ser
TGA
[ENA]
¢þ
>WENV180367167
OBOE01016391
[OBOE] marine metagenome; ENVO:00002010
173
257
+
Ser
TGA
[ENA]
¢þ
>WENV181162858
OEIO01024622
[OEIO] marine metagenome; sea ice
249
333
+
Ser
TGA
[ENA]
¢þ
>WENV181321762
OFKN01004150
[OFKN] marine metagenome; seawater
409
325
-
Ser
TGA
[ENA]
¢þ
>WENV181325754
OFLJ01021996
[OFLJ] seawater metagenome; seawater
431
515
+
Ser
TGA
[ENA]
¢þ
>WENV181390941
OFRQ01006136
[OFRQ] seawater metagenome; seawater
420
504
+
Ser
TGA
[ENA]
¢þ
>WENV181392701
OFRX01002369
[OFRX] seawater metagenome; seawater
922
1006
+
Ser
TGA
[ENA]
¢þ
>WENV183619600
OOFQ01022377
[OOFQ] marine metagenome; seawater
431
515
+
Ser
TGA
[ENA]
¢þ
>WENV183622473
OOFV01057784
[OOFV] marine metagenome; seawater
551
467
-
Ser
TGA
[ENA]
¢þ
>WENV183626045
OOGH01006204
[OOGH] marine metagenome; seawater
420
504
+
Ser
TGA
[ENA]
¢þ
>WENV183629058
OOGP01002264
[OOGP] marine metagenome; seawater
922
1006
+
Ser
TGA
[ENA]
¢þ
>WENV183629885
OOGQ01035972
[OOGQ] marine metagenome; seawater
228
144
-
Ser
TGA
[ENA]
¢þ
>WENV170567824
FLMP01006426
[FLMP] seawater metagenome; seawater
2623
2708
+
Ser
TGA
[ENA]
¢þ
>WENV170569851
FLMP01327197
[FLMP] seawater metagenome; seawater
418
502
+
Ser
TGA
[ENA]
¢þ
>WENV170951886
MEHZ011575158
[MEHZ] marine metagenome; marine surface water
84
-1
-
Ser
TGA
[ENA]
¢þ
>WENV170951985
MEHZ011579050
[MEHZ] marine metagenome; marine surface water
444
529
+
Ser
TGA
[ENA]
¢þ
>WENV170952251
MEHZ011590472
[MEHZ] marine metagenome; marine surface water
3953
3868
-
Ser
TGA
[ENA]
¢þ
>ENV09004313
ADKQ01005096
Marine metagenome apWin_C1
454
369
-
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK