tRNA genes clustered and arranged according to each identical group

Marine metagenome gcontig_contig00001

Anticodon = GCT

HIT: 2 Group(s).
Download Sequence Representative sequence of each cluster
View ClustalW result
Sort by Identical group No. Sort by the number of tRNAs in the Identical group
Select
Sequence ID Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species Start End Direction AA Anticodon Genome/Seq. Info. Decision
Identical group No.20494 (17 seq.)
>C025147 CP000097 Cyanobacteriota Synechococcus sp. CC9902 [CP000097] 1887733 1887821 + Ser GCT [Ensembl] ¡û
>w019157 AATZ01000002 Cyanobacteriota Synechococcus sp. BL107 [AATZ] 716240 716147 - Ser GCT [ENA] ¡û
>WENV180100802 OAOT01000014 [OAOT] marine metagenome; Mesotrophic water 2708 2798 + Ser GCT [ENA] ¢þ
>WENV180115647 OAPT01015685 [OAPT] marine metagenome; seawater 613 523 - Ser GCT [ENA] ¢þ
>WENV181092620 OEBK01015092 [OEBK] marine metagenome; ENVO:00002010 for 'seawater 328 238 - Ser GCT [ENA] ¢þ
>WENV170131821 CENT01009686 [CENT] marine metagenome genome assembly TARA_007_DCM_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 545 635 + Ser GCT [ENA] ¢þ
>WENV170279764 CERR01052252 [CERR] marine metagenome genome assembly TARA_068_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 228 318 + Ser GCT [ENA] ¢þ
>WENV170385230 CETY01051484 [CETY] marine metagenome genome assembly TARA_133_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 490 400 - Ser GCT [ENA] ¢þ
>WENV170498202 CEVT01014352 [CEVT] marine metagenome genome assembly TARA_150_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 273 183 - Ser GCT [ENA] ¢þ
>WENV170532004 CEWO01013673 [CEWO] marine metagenome genome assembly TARA_145_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 1029 939 - Ser GCT [ENA] ¢þ
>WENV170861137 MDTB01060239 [MDTB] marine metagenome; seawater 159 69 - Ser GCT [ENA] ¢þ
>SRA1002578 SRR001663.59033 Synechococcus metagenome reveals major roles for horizontal gene transfer and plasmids in population diversity (SRP000219) 4 94 + Ser GCT [SRA]
>SRA1002661 SRR001663.309809 Synechococcus metagenome reveals major roles for horizontal gene transfer and plasmids in population diversity (SRP000219) 4 94 + Ser GCT [SRA]
>W1810529769 QCVA01000072 Cyanobacteriota Synechococcus sp. AG-683-A22 [QCVA] 298 208 - Ser GCT [ENA] ¡û
>W1810529824 QCVD01000009 Cyanobacteriota Synechococcus sp. AG-683-C23 [QCVD] 5266 5176 - Ser GCT [ENA] ¡û
>W1810529981 QCVM01000010 Cyanobacteriota Synechococcus sp. AG-686-B21 [QCVM] 42920 43010 + Ser GCT [ENA] ¡û
>ENV09001609 ABVN01003123 Marine metagenome gcontig_contig00001 108 18 - Ser GCT [ENA] ¡û
Identical group No.20540 (9 seq.)
>WENV180103619 OAPA01093031 [OAPA] marine metagenome; ENVO:00002010 49 138 + Ser GCT [ENA] ¢þ
>WENV180110035 OAPL01046588 [OAPL] marine metagenome; ENVO:00002010 for 'seawater 387 298 - Ser GCT [ENA] ¢þ
>WENV180114585 OAPS01021201 [OAPS] marine metagenome; sea water 112 201 + Ser GCT [ENA] ¢þ
>WENV180209032 OBAK01007137 [OBAK] marine metagenome; ENVO.00002150 171 82 - Ser GCT [ENA] ¢þ
>WENV180393776 OBPR01007485 [OBPR] marine metagenome; ENVO:00002042 201 290 + Ser GCT [ENA] ¢þ
>SRA1002615 SRR001663.159618 Synechococcus metagenome reveals major roles for horizontal gene transfer and plasmids in population diversity (SRP000219) 17 106 + Ser GCT [SRA]
>SRA1002658 SRR001663.299653 Synechococcus metagenome reveals major roles for horizontal gene transfer and plasmids in population diversity (SRP000219) 17 106 + Ser GCT [SRA]
>ENV09001620 ABVN01022734 Marine metagenome gcontig_contig00001 17 106 + Ser GCT [ENA] ¡û
>WENV032836 AACY021478766 Marine microbial communities from Global Ocean Sampling (GOS) 452 361 - Ser GCT [ENA]
Select
Sequence ID Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species Start End Direction AA Anticodon Genome/Seq. Info. Decision
Download Sequence Representative sequence of each cluster
View ClustalW result

BACK