This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Marine metagenome gcontig_contig00001
Anticodon = TAG
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.182697 (25 seq.)
>C025151
CP000097
Cyanobacteriota
Synechococcus sp. CC9902 [CP000097]
1965785
1965704
-
Leu
TAG
[Ensembl]
¡û
>w019155
AATZ01000002
Cyanobacteriota
Synechococcus sp. BL107 [AATZ]
636570
636656
+
Leu
TAG
[ENA]
¡û
>WENV180100915
OAOT01011260
[OAOT] marine metagenome; Mesotrophic water
105
188
+
Leu
TAG
[ENA]
¢þ
>WENV180114334
OAPS01004810
[OAPS] marine metagenome; sea water
707
790
+
Leu
TAG
[ENA]
¢þ
>WENV180116119
OAPT01139873
[OAPT] marine metagenome; seawater
236
153
-
Leu
TAG
[ENA]
¢þ
>WENV180375756
OBOL01066572
[OBOL] marine metagenome; Surface water
449
366
-
Leu
TAG
[ENA]
¢þ
>WENV180382205
OBOS01150759
[OBOS] marine metagenome; ENVO 00002150
291
208
-
Leu
TAG
[ENA]
¢þ
>WENV180399837
OBQO01051092
[OBQO] marine metagenome; ENVO:00002010
297
380
+
Leu
TAG
[ENA]
¢þ
>WENV183060132
OLHW01019115
[OLHW] seawater metagenome; Sea water
549
466
-
Leu
TAG
[ENA]
¢þ
>WENV170131839
CENT01010567
[CENT] marine metagenome genome assembly TARA_007_DCM_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1530
1447
-
Leu
TAG
[ENA]
¢þ
>WENV170401023
CEUE01176879
[CEUE] marine metagenome genome assembly TARA_133_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
14953
15036
+
Leu
TAG
[ENA]
¢þ
>WENV170498479
CEVT01040818
[CEVT] marine metagenome genome assembly TARA_150_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
111
194
+
Leu
TAG
[ENA]
¢þ
>WENV170609904
FUWD011566474
[FUWD] metagenome; unknown
188
105
-
Leu
TAG
[ENA]
¢þ
>WENV170813906
MDSW01208393
[MDSW] marine metagenome; seawater
2401
2318
-
Leu
TAG
[ENA]
¢þ
>WENV170877694
MDTC01062768
[MDTC] marine metagenome; seawater
11419
11502
+
Leu
TAG
[ENA]
¢þ
>WENV171002461
NHNJ01045691
[NHNJ] marine metagenome; surface waters at 20 m depth at the end of the Scripps Institution of Oceanography (SIO) pier
3635
3718
+
Leu
TAG
[ENA]
¢þ
>WENV171002802
NHNJ01174082
[NHNJ] marine metagenome; surface waters at 20 m depth at the end of the Scripps Institution of Oceanography (SIO) pier
755
672
-
Leu
TAG
[ENA]
¢þ
>SRA1002664
SRR001663.320819
Synechococcus metagenome reveals major roles for horizontal gene transfer and plasmids in population diversity (SRP000219)
92
9
-
Leu
TAG
[SRA]
>W1810529366
QCUL01000004
Cyanobacteriota
Synechococcus sp. AG-679-C18 [QCUL]
34071
33988
-
Leu
TAG
[ENA]
¡û
>W1810529758
QCVA01000013
Cyanobacteriota
Synechococcus sp. AG-683-A22 [QCVA]
1845
1928
+
Leu
TAG
[ENA]
¡û
>W1810529799
QCVC01000025
Cyanobacteriota
Synechococcus sp. AG-683-B21 [QCVC]
8159
8242
+
Leu
TAG
[ENA]
¡û
>W1810529820
QCVD01000007
Cyanobacteriota
Synechococcus sp. AG-683-C23 [QCVD]
64192
64275
+
Leu
TAG
[ENA]
¡û
>W1810529993
QCVM01000023
Cyanobacteriota
Synechococcus sp. AG-686-B21 [QCVM]
12818
12735
-
Leu
TAG
[ENA]
¡û
>W1810530024
QCVN01000068
Cyanobacteriota
Synechococcus sp. AG-686-C21 [QCVN]
364
283
-
Leu
TAG
[ENA]
¡û
>ENV09001616
ABVN01015963
Marine metagenome gcontig_contig00001
2
85
+
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK