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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Metagenomic analysis of viruses in reclaimed water (SRP000673)
Anticodon = CAA
HIT:
6 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.26599 (1 seq.)
>SRA1005615
SRR014585.25390
Metagenomic analysis of viruses in reclaimed water (SRP000673)
149
58
-
Leu
CAA
[SRA]
Identical group No.72748 (1 seq.)
>SRA1005870
SRR014588.185199
Metagenomic analysis of viruses in reclaimed water (SRP000673)
22
110
+
Leu
CAA
[SRA]
Identical group No.118270 (1 seq.)
>SRA1005509
SRR014584.114094
Metagenomic analysis of viruses in reclaimed water (SRP000673)
110
194
+
Leu
CAA
[SRA]
Identical group No.157458 (1 seq.)
>SRA1005487
SRR014584.74146
Metagenomic analysis of viruses in reclaimed water (SRP000673)
179
97
-
Leu
CAA
[SRA]
Identical group No.231377 (1 seq.)
>SRA1005699
SRR014586.152853
Metagenomic analysis of viruses in reclaimed water (SRP000673)
34
116
+
Leu
CAA
[SRA]
Identical group No.300196 (5 seq.)
>SRA1005449
SRR014584.13160
Metagenomic analysis of viruses in reclaimed water (SRP000673)
163
239
+
Leu
CAA
[SRA]
>SRA1005501
SRR014584.103730
Metagenomic analysis of viruses in reclaimed water (SRP000673)
159
235
+
Leu
CAA
[SRA]
>SRA1005526
SRR014584.138685
Metagenomic analysis of viruses in reclaimed water (SRP000673)
159
235
+
Leu
CAA
[SRA]
>SRA1005587
SRR014584.215744
Metagenomic analysis of viruses in reclaimed water (SRP000673)
130
54
-
Leu
CAA
[SRA]
>SRA1005614
SRR014584.261803
Metagenomic analysis of viruses in reclaimed water (SRP000673)
163
239
+
Leu
CAA
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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