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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Metagenomic analysis of viruses in reclaimed water (SRP000673)
Anticodon = CCA
HIT:
6 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.455393 (29 seq.)
>W1711075773
LSKR01004161
Actinomycetota
Corynebacterium durum [LSKR]
67763
67838
+
Trp
CCA
[ENA]
¡û
>W1711269054
LZDO01000012
Gammaproteobacteria
Moraxella osloensis [LZDO]
126314
126239
-
Trp
CCA
[ENA]
¡û
>W1711269167
LZDQ01000023
Gammaproteobacteria
Moraxella osloensis [LZDQ]
74272
74347
+
Trp
CCA
[ENA]
¡û
>W1711282101
LZMT01000034
Gammaproteobacteria
Moraxella osloensis [LZMT]
47197
47272
+
Trp
CCA
[ENA]
¡û
>W1711511511
MLCM01000004
Alphaproteobacteria
Enhydrobacter sp. H5 [MLCM]
400173
400098
-
Trp
CCA
[ENA]
¡û
>W131061253
ANIN01000001
Gammaproteobacteria
Moraxella macacae 408225 [ANIN]
774270
774345
+
Trp
CCA
[ENA]
¡û
>W131165672
ARBT01000014
Gammaproteobacteria
Moraxella boevrei DSM 14165 [ARBT]
40302
40227
-
Trp
CCA
[ENA]
¡û
>WENV180283665
OBID01001492
[OBID] metagenome; sludge
2655
2580
-
Trp
CCA
[ENA]
¢þ
>W141073544
ASSF01000641
Bacillota
Paenibacillus sophorae S27 [ASSF]
6103
6178
+
Trp
CCA
[ENA]
¡û
>WENV181222951
OFDC01000818
[OFDC] hot springs metagenome; Water
13661
13586
-
Trp
CCA
[ENA]
¢þ
>WENV181227673
OFDN01028056
[OFDN] hot springs metagenome; Water
545
470
-
Trp
CCA
[ENA]
¢þ
>C181001858
AP017381
Gammaproteobacteria
Moraxella osloensis KMC41 [AP017381]
585551
585626
+
Trp
CCA
-
¡û
>C181096892
CP024176
Gammaproteobacteria
Moraxella osloensis YHS [CP024176]
628930
629005
+
Trp
CCA
-
¡û
>C181096939
CP024180
Gammaproteobacteria
Moraxella osloensis KSH [CP024180]
581703
581778
+
Trp
CCA
-
¡û
>C181096986
CP024185
Gammaproteobacteria
Moraxella osloensis TT16 [CP024185]
628860
628935
+
Trp
CCA
-
¡û
>C181099957
CP024443
Gammaproteobacteria
Moraxella osloensis NP7 [CP024443]
588941
589016
+
Trp
CCA
-
¡û
>C191176287
CP040257
Gammaproteobacteria
Moraxella osloensis MOXF1 [CP040257]
2072021
2072096
+
Trp
CCA
-
¡û
>W1910871593
NCXF01000006
Gammaproteobacteria
Moraxella osloensis OG2 [NCXF]
57520
57595
+
Trp
CCA
[ENA]
¡û
>W1911543886
ORZI01000294
Gammaproteobacteria
Xanthomonas fragariae PD 2660 [ORZI]
11266
11341
+
Trp
CCA
[ENA]
¡û
>W1810190263
PKJS01000010
Gammaproteobacteria
Moraxella osloensis UMB0416 [PKJS]
68710
68635
-
Trp
CCA
[ENA]
¡û
>SRA1005766
SRR014587.64608
Metagenomic analysis of viruses in reclaimed water (SRP000673)
147
72
-
Trp
CCA
[SRA]
>W10106210
ACYI01000049
Alphaproteobacteria
Enhydrobacter aerosaccus SK60 [ACYI]
42489
42414
-
Trp
CCA
[ENA]
¡û
>W11108533
ACYI01000049
Alphaproteobacteria
Enhydrobacter aerosaccus SK60 [ACYI]
42489
42414
-
Trp
CCA
[ENA]
¡û
>W1511705927
LGSW01000001
Alphaproteobacteria
Enhydrobacter aerosaccus CGMCC9176 [LGSW]
122892
122967
+
Trp
CCA
[ENA]
¡û
>C161069222
CP014234
Gammaproteobacteria
Moraxella osloensis CCUG 350 [CP014234]
2159326
2159401
+
Trp
CCA
[Ensembl]
¡û
>W1610915078
LSKR01004161
Actinomycetota
Corynebacterium durum [LSKR]
67763
67838
+
Trp
CCA
[ENA]
¡û
>W1611029866
LZDO01000012
Gammaproteobacteria
Moraxella osloensis [LZDO]
126314
126239
-
Trp
CCA
[ENA]
¡û
>W1611029979
LZDQ01000023
Gammaproteobacteria
Moraxella osloensis [LZDQ]
74272
74347
+
Trp
CCA
[ENA]
¡û
>W1611041312
LZMT01000034
Gammaproteobacteria
Moraxella osloensis [LZMT]
47197
47272
+
Trp
CCA
[ENA]
¡û
Identical group No.787962 (22 seq.)
>SRA1005455
SRR014584.23316
Metagenomic analysis of viruses in reclaimed water (SRP000673)
142
215
+
Trp
CCA
[SRA]
>SRA1005456
SRR014584.27390
Metagenomic analysis of viruses in reclaimed water (SRP000673)
248
175
-
Trp
CCA
[SRA]
>SRA1005467
SRR014584.43946
Metagenomic analysis of viruses in reclaimed water (SRP000673)
239
166
-
Trp
CCA
[SRA]
>SRA1005479
SRR014584.63654
Metagenomic analysis of viruses in reclaimed water (SRP000673)
161
88
-
Trp
CCA
[SRA]
>SRA1005484
SRR014584.67491
Metagenomic analysis of viruses in reclaimed water (SRP000673)
115
188
+
Trp
CCA
[SRA]
>SRA1005491
SRR014584.84450
Metagenomic analysis of viruses in reclaimed water (SRP000673)
176
249
+
Trp
CCA
[SRA]
>SRA1005492
SRR014584.85166
Metagenomic analysis of viruses in reclaimed water (SRP000673)
36
109
+
Trp
CCA
[SRA]
>SRA1005494
SRR014584.86710
Metagenomic analysis of viruses in reclaimed water (SRP000673)
80
7
-
Trp
CCA
[SRA]
>SRA1005497
SRR014584.96882
Metagenomic analysis of viruses in reclaimed water (SRP000673)
134
207
+
Trp
CCA
[SRA]
>SRA1005502
SRR014584.104194
Metagenomic analysis of viruses in reclaimed water (SRP000673)
205
132
-
Trp
CCA
[SRA]
>SRA1005506
SRR014584.111517
Metagenomic analysis of viruses in reclaimed water (SRP000673)
175
102
-
Trp
CCA
[SRA]
>SRA1005511
SRR014584.120554
Metagenomic analysis of viruses in reclaimed water (SRP000673)
122
49
-
Trp
CCA
[SRA]
>SRA1005512
SRR014584.124602
Metagenomic analysis of viruses in reclaimed water (SRP000673)
121
48
-
Trp
CCA
[SRA]
>SRA1005522
SRR014584.136673
Metagenomic analysis of viruses in reclaimed water (SRP000673)
124
197
+
Trp
CCA
[SRA]
>SRA1005524
SRR014584.137703
Metagenomic analysis of viruses in reclaimed water (SRP000673)
84
11
-
Trp
CCA
[SRA]
>SRA1005536
SRR014584.157107
Metagenomic analysis of viruses in reclaimed water (SRP000673)
72
145
+
Trp
CCA
[SRA]
>SRA1005538
SRR014584.163044
Metagenomic analysis of viruses in reclaimed water (SRP000673)
3
76
+
Trp
CCA
[SRA]
>SRA1005549
SRR014584.176013
Metagenomic analysis of viruses in reclaimed water (SRP000673)
46
119
+
Trp
CCA
[SRA]
>SRA1005550
SRR014584.177927
Metagenomic analysis of viruses in reclaimed water (SRP000673)
124
197
+
Trp
CCA
[SRA]
>SRA1005554
SRR014584.182793
Metagenomic analysis of viruses in reclaimed water (SRP000673)
223
150
-
Trp
CCA
[SRA]
>SRA1005598
SRR014584.227496
Metagenomic analysis of viruses in reclaimed water (SRP000673)
25
98
+
Trp
CCA
[SRA]
>SRA1005612
SRR014584.256292
Metagenomic analysis of viruses in reclaimed water (SRP000673)
201
274
+
Trp
CCA
[SRA]
Identical group No.787968 (5 seq.)
>SRA1005577
SRR014584.206134
Metagenomic analysis of viruses in reclaimed water (SRP000673)
126
199
+
Trp
CCA
[SRA]
>SRA1005586
SRR014584.213728
Metagenomic analysis of viruses in reclaimed water (SRP000673)
133
206
+
Trp
CCA
[SRA]
>SRA1005595
SRR014584.226288
Metagenomic analysis of viruses in reclaimed water (SRP000673)
67
140
+
Trp
CCA
[SRA]
>SRA1005628
SRR014586.10071
Metagenomic analysis of viruses in reclaimed water (SRP000673)
165
92
-
Trp
CCA
[SRA]
>SRA1005750
SRR014586.254523
Metagenomic analysis of viruses in reclaimed water (SRP000673)
157
84
-
Trp
CCA
[SRA]
Identical group No.787973 (1 seq.)
>SRA1005906
SRR014589.35126
Metagenomic analysis of viruses in reclaimed water (SRP000673)
199
272
+
Trp
CCA
[SRA]
Identical group No.818445 (1 seq.)
>SRA1005672
SRR014586.117063
Metagenomic analysis of viruses in reclaimed water (SRP000673)
106
179
+
Trp
CCA
[SRA]
Identical group No.818449 (1 seq.)
>SRA1005710
SRR014586.170819
Metagenomic analysis of viruses in reclaimed water (SRP000673)
130
203
+
Trp
CCA
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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