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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Metagenomic analysis of viruses in reclaimed water (SRP000673)
Anticodon = CCT
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.298922 (8 seq.)
>C191095370
CP032839
Gammaproteobacteria
Aeromonas veronii FC951 [CP032839]
3533498
3533574
+
Arg
CCT
-
¡û
>W1911420666
NXBT01000044
Gammaproteobacteria
Aeromonas salmonicida Z5-5 [NXBT]
567
643
+
Arg
CCT
[ENA]
¡û
>W1911705682
QORJ01000089
Gammaproteobacteria
Aeromonas taiwanensis 186 [QORJ]
2395
2471
+
Arg
CCT
[ENA]
¡û
>W1911705770
QORK01000091
Gammaproteobacteria
Aeromonas taiwanensis 198 [QORK]
3714
3790
+
Arg
CCT
[ENA]
¡û
>W1911705856
QORL01000091
Gammaproteobacteria
Aeromonas taiwanensis 1713 [QORL]
3714
3790
+
Arg
CCT
[ENA]
¡û
>W1810196071
PKSR01000044
Gammaproteobacteria
Aeromonas veronii FC951 [PKSR]
34929
34853
-
Arg
CCT
[ENA]
¡û
>W1810240239
PPTE01000039
Gammaproteobacteria
Aeromonas veronii 126-14 [PPTE]
562
638
+
Arg
CCT
[ENA]
¡û
>SRA1005788
SRR014587.139518
Metagenomic analysis of viruses in reclaimed water (SRP000673)
22
98
+
Arg
CCT
[SRA]
Identical group No.455390 (28 seq.)
>W1711075752
LSKR01002055
Actinomycetota
Corynebacterium durum [LSKR]
12140
12065
-
Arg
CCT
[ENA]
¡û
>W1711269077
LZDO01000035
Gammaproteobacteria
Moraxella osloensis [LZDO]
43020
43095
+
Arg
CCT
[ENA]
¡û
>W1711269150
LZDQ01000001
Gammaproteobacteria
Moraxella osloensis [LZDQ]
799958
799883
-
Arg
CCT
[ENA]
¡û
>W1711282109
LZMT01000034
Gammaproteobacteria
Moraxella osloensis [LZMT]
834676
834601
-
Arg
CCT
[ENA]
¡û
>W1711511501
MLCM01000003
Alphaproteobacteria
Enhydrobacter sp. H5 [MLCM]
179077
179152
+
Arg
CCT
[ENA]
¡û
>WENV180283999
OBID01009775
[OBID] metagenome; sludge
1703
1778
+
Arg
CCT
[ENA]
¢þ
>W141073554
ASSF01000822
Bacillota
Paenibacillus sophorae S27 [ASSF]
130
55
-
Arg
CCT
[ENA]
¡û
>WENV181222763
OFDC01000233
[OFDC] hot springs metagenome; Water
32239
32164
-
Arg
CCT
[ENA]
¢þ
>C181001885
AP017381
Gammaproteobacteria
Moraxella osloensis KMC41 [AP017381]
1441751
1441676
-
Arg
CCT
-
¡û
>C181096919
CP024176
Gammaproteobacteria
Moraxella osloensis YHS [CP024176]
1479215
1479140
-
Arg
CCT
-
¡û
>C181096966
CP024180
Gammaproteobacteria
Moraxella osloensis KSH [CP024180]
1395897
1395822
-
Arg
CCT
-
¡û
>C181097013
CP024185
Gammaproteobacteria
Moraxella osloensis TT16 [CP024185]
1478280
1478205
-
Arg
CCT
-
¡û
>C181099984
CP024443
Gammaproteobacteria
Moraxella osloensis NP7 [CP024443]
1358712
1358637
-
Arg
CCT
-
¡û
>C191176271
CP040257
Gammaproteobacteria
Moraxella osloensis MOXF1 [CP040257]
467071
467146
+
Arg
CCT
-
¡û
>W1911543870
ORZI01000263
Gammaproteobacteria
Xanthomonas fragariae PD 2660 [ORZI]
25806
25731
-
Arg
CCT
[ENA]
¡û
>W1810190237
PKJS01000001
Gammaproteobacteria
Moraxella osloensis UMB0416 [PKJS]
265409
265484
+
Arg
CCT
[ENA]
¡û
>SRA1005784
SRR014587.106926
Metagenomic analysis of viruses in reclaimed water (SRP000673)
85
10
-
Arg
CCT
[SRA]
>SRA1005816
SRR014587.212176
Metagenomic analysis of viruses in reclaimed water (SRP000673)
77
2
-
Arg
CCT
[SRA]
>SRA1006098
SRR014589.186979
Metagenomic analysis of viruses in reclaimed water (SRP000673)
74
1
-
Arg
CCT
[SRA]
>SRA1006109
SRR014589.202517
Metagenomic analysis of viruses in reclaimed water (SRP000673)
74
1
-
Arg
CCT
[SRA]
>W10106190
ACYI01000016
Alphaproteobacteria
Enhydrobacter aerosaccus SK60 [ACYI]
19271
19346
+
Arg
CCT
[ENA]
¡û
>W11108513
ACYI01000016
Alphaproteobacteria
Enhydrobacter aerosaccus SK60 [ACYI]
19271
19346
+
Arg
CCT
[ENA]
¡û
>W1511705959
LGSW01000009
Alphaproteobacteria
Enhydrobacter aerosaccus CGMCC9176 [LGSW]
48136
48211
+
Arg
CCT
[ENA]
¡û
>C161069249
CP014234
Gammaproteobacteria
Moraxella osloensis CCUG 350 [CP014234]
518767
518692
-
Arg
CCT
[Ensembl]
¡û
>W1610915057
LSKR01002055
Actinomycetota
Corynebacterium durum [LSKR]
12140
12065
-
Arg
CCT
[ENA]
¡û
>W1611029889
LZDO01000035
Gammaproteobacteria
Moraxella osloensis [LZDO]
43020
43095
+
Arg
CCT
[ENA]
¡û
>W1611029962
LZDQ01000001
Gammaproteobacteria
Moraxella osloensis [LZDQ]
799958
799883
-
Arg
CCT
[ENA]
¡û
>W1611041320
LZMT01000034
Gammaproteobacteria
Moraxella osloensis [LZMT]
834676
834601
-
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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