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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Metagenomic analysis of viruses in reclaimed water (SRP000673)
Anticodon = GCA
HIT:
5 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.780352 (26 seq.)
>W1711075729
LSKR01000172
Actinomycetota
Corynebacterium durum [LSKR]
97838
97765
-
Cys
GCA
[ENA]
¡û
>W1711269075
LZDO01000034
Gammaproteobacteria
Moraxella osloensis [LZDO]
16052
16125
+
Cys
GCA
[ENA]
¡û
>W1711269142
LZDQ01000001
Gammaproteobacteria
Moraxella osloensis [LZDQ]
989515
989588
+
Cys
GCA
[ENA]
¡û
>W1711282126
LZMT01000059
Gammaproteobacteria
Moraxella osloensis [LZMT]
73593
73666
+
Cys
GCA
[ENA]
¡û
>W1711511504
MLCM01000003
Alphaproteobacteria
Enhydrobacter sp. H5 [MLCM]
38133
38060
-
Cys
GCA
[ENA]
¡û
>WENV180284138
OBID01017486
[OBID] metagenome; sludge
693
620
-
Cys
GCA
[ENA]
¢þ
>W141073506
ASSF01000119
Bacillota
Paenibacillus sophorae S27 [ASSF]
12486
12559
+
Cys
GCA
[ENA]
¡û
>WENV181201567
OERO01005529
[OERO] metagenome; water of meat washing
791
718
-
Cys
GCA
[ENA]
¢þ
>WENV181227525
OFDN01014554
[OFDN] hot springs metagenome; Water
2407
2480
+
Cys
GCA
[ENA]
¢þ
>C181001867
AP017381
Gammaproteobacteria
Moraxella osloensis KMC41 [AP017381]
1582768
1582841
+
Cys
GCA
-
¡û
>C181096901
CP024176
Gammaproteobacteria
Moraxella osloensis YHS [CP024176]
1621625
1621698
+
Cys
GCA
-
¡û
>C181096948
CP024180
Gammaproteobacteria
Moraxella osloensis KSH [CP024180]
1534351
1534424
+
Cys
GCA
-
¡û
>C181096995
CP024185
Gammaproteobacteria
Moraxella osloensis TT16 [CP024185]
1620690
1620763
+
Cys
GCA
-
¡û
>W1910871583
NCXF01000003
Gammaproteobacteria
Moraxella osloensis OG2 [NCXF]
197029
197102
+
Cys
GCA
[ENA]
¡û
>W1810190239
PKJS01000001
Gammaproteobacteria
Moraxella osloensis UMB0416 [PKJS]
129806
129733
-
Cys
GCA
[ENA]
¡û
>SRA1005791
SRR014587.154814
Metagenomic analysis of viruses in reclaimed water (SRP000673)
160
87
-
Cys
GCA
[SRA]
>SRA1005802
SRR014587.178953
Metagenomic analysis of viruses in reclaimed water (SRP000673)
160
87
-
Cys
GCA
[SRA]
>SRA1005825
SRR014587.237357
Metagenomic analysis of viruses in reclaimed water (SRP000673)
148
221
+
Cys
GCA
[SRA]
>W10106184
ACYI01000002
Alphaproteobacteria
Enhydrobacter aerosaccus SK60 [ACYI]
46077
46004
-
Cys
GCA
[ENA]
¡û
>W11108507
ACYI01000002
Alphaproteobacteria
Enhydrobacter aerosaccus SK60 [ACYI]
46077
46004
-
Cys
GCA
[ENA]
¡û
>W1511705952
LGSW01000004
Alphaproteobacteria
Enhydrobacter aerosaccus CGMCC9176 [LGSW]
72906
72833
-
Cys
GCA
[ENA]
¡û
>C161069205
CP014234
Gammaproteobacteria
Moraxella osloensis CCUG 350 [CP014234]
653090
653163
+
Cys
GCA
[Ensembl]
¡û
>W1610915034
LSKR01000172
Actinomycetota
Corynebacterium durum [LSKR]
97838
97765
-
Cys
GCA
[ENA]
¡û
>W1611029887
LZDO01000034
Gammaproteobacteria
Moraxella osloensis [LZDO]
16052
16125
+
Cys
GCA
[ENA]
¡û
>W1611029954
LZDQ01000001
Gammaproteobacteria
Moraxella osloensis [LZDQ]
989515
989588
+
Cys
GCA
[ENA]
¡û
>W1611041337
LZMT01000059
Gammaproteobacteria
Moraxella osloensis [LZMT]
73593
73666
+
Cys
GCA
[ENA]
¡û
Identical group No.782404 (38 seq.)
>W131002759
AGZI01000028
Betaproteobacteria
Massilia timonae CCUG 45783 [AGZI]
23829
23902
+
Cys
GCA
[ENA]
¡û
>W1710863170
LMEW01000036
Betaproteobacteria
Massilia sp. Root133 [LMEW]
281384
281457
+
Cys
GCA
[ENA]
¡û
>W1710864693
LMGB01000037
Betaproteobacteria
Massilia sp. Root1485 [LMGB]
281886
281959
+
Cys
GCA
[ENA]
¡û
>W1710875408
LMOJ01000001
Betaproteobacteria
Massilia sp. Leaf139 [LMOJ]
594935
595008
+
Cys
GCA
[ENA]
¡û
>W131181072
ARNP01000130
Betaproteobacteria
Massilia niastensis DSM 21313 [ARNP]
689
762
+
Cys
GCA
[ENA]
¡û
>W131219548
ATYR01000001
Betaproteobacteria
Massilia alkalitolerans DSM 17462 [ATYR]
214883
214810
-
Cys
GCA
[ENA]
¡û
>W131237340
AUOA01000044
Betaproteobacteria
Oxalobacteraceae bacterium JGI 0001002-H16 [AUOA]
3547
3620
+
Cys
GCA
[ENA]
¡û
>W1711767620
MVAD01000001
Betaproteobacteria
Massilia sp. KIM [MVAD]
524735
524808
+
Cys
GCA
[ENA]
¡û
>C171088549
CP019038
Betaproteobacteria
Massilia putida 6NM-7 [CP019038]
1772564
1772491
-
Cys
GCA
-
¡û
>WENV180014203
FPIC01095619
[FPIC] soil metagenome; Soil
202
129
-
Cys
GCA
[ENA]
¢þ
>WENV183726540
PJTO01000003
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment
401503
401430
-
Cys
GCA
[ENA]
¢þ
>WENV183728296
PJTQ01000010
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
401503
401430
-
Cys
GCA
[ENA]
¢þ
>WENV183737183
PJUD01001097
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
5710
5783
+
Cys
GCA
[ENA]
¢þ
>WENV183741048
PJUF01031905
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
264
337
+
Cys
GCA
[ENA]
¢þ
>WENV170574832
FLYN01011416
[FLYN] hot springs metagenome; Sediment
169
96
-
Cys
GCA
[ENA]
¢þ
>WENV170708471
LNAP01085418
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
744
671
-
Cys
GCA
[ENA]
¢þ
>C181163970
CP028324
Betaproteobacteria
Pseudoduganella armeniaca ZMN-3 [CP028324]
4447860
4447787
-
Cys
GCA
-
¡û
>C181177134
CP029343
Betaproteobacteria
Massilia oculi CCUG 43427 [CP029343]
5033884
5033957
+
Cys
GCA
-
¡û
>C181187723
CP030092
Betaproteobacteria
Massilia sp. YMA4 [CP030092]
601542
601615
+
Cys
GCA
-
¡û
>C191150777
CP036401
Betaproteobacteria
Pseudoduganella albidiflava DSM 17472 [CP036401]
1804278
1804351
+
Cys
GCA
-
¡û
>C191157362
CP038026
Betaproteobacteria
Pseudoduganella plicata DSM 17505 [CP038026]
1518457
1518384
-
Cys
GCA
-
¡û
>C191174022
CP040017
Betaproteobacteria
Pseudoduganella umbonata DSMZ 26121 [CP040017]
2731150
2731077
-
Cys
GCA
-
¡û
>W141739230
JNNN01000019
Betaproteobacteria
Massilia sp. LC238 [JNNN]
85683
85756
+
Cys
GCA
[ENA]
¡û
>W141811288
JPXI01000023
Betaproteobacteria
Massilia sp. BSC265 consociata [JPXI]
108371
108298
-
Cys
GCA
[ENA]
¡û
>W141821404
JQNN01000001
Betaproteobacteria
Massilia sp. 9096 [JQNN]
2335132
2335059
-
Cys
GCA
[ENA]
¡û
>W1911618971
PPXQ01000002
Betaproteobacteria
Massilia sp. Mn16-1_5 [PPXQ]
313292
313365
+
Cys
GCA
[ENA]
¡û
>W1810330109
PUIP01000001
Betaproteobacteria
Massilia phosphatilytica 12-OD1 [PUIP]
429139
429212
+
Cys
GCA
[ENA]
¡û
>SRA1005830
SRR014587.253382
Metagenomic analysis of viruses in reclaimed water (SRP000673)
70
143
+
Cys
GCA
[SRA]
>W1810673288
QJTZ01000019
Gammaproteobacteria
Pseudomonas syringae pv. pisi 1452A [QJTZ]
139952
140025
+
Cys
GCA
[ENA]
¡û
>W1511310222
JPQD01000071
Betaproteobacteria
Massilia sp. JS1662 [JPQD]
232
305
+
Cys
GCA
[ENA]
¡û
>W1511657436
LELH02000025
Betaproteobacteria
Massilia sp. WF1 [LELH]
2787
2714
-
Cys
GCA
[ENA]
¡û
>C161043210
CP012640
Betaproteobacteria
Massilia sp. WG5 [CP012640]
4301633
4301560
-
Cys
GCA
-
¡û
>W1610725516
LMEW01000036
Betaproteobacteria
Massilia sp. Root133 [LMEW]
281384
281457
+
Cys
GCA
[ENA]
¡û
>W1610727039
LMGB01000037
Betaproteobacteria
Massilia sp. Root1485 [LMGB]
281886
281959
+
Cys
GCA
[ENA]
¡û
>W1610737754
LMOJ01000001
Betaproteobacteria
Massilia sp. Leaf139 [LMOJ]
594935
595008
+
Cys
GCA
[ENA]
¡û
>W1710512848
FMZS01000008
Betaproteobacteria
Massilia sp. PDC64 [FMZS]
430163
430236
+
Cys
GCA
[ENA]
¡û
>W1710557608
FOLD01000025
Betaproteobacteria
Massilia yuzhufengensis [FOLD]
953
880
-
Cys
GCA
[ENA]
¡û
>W1710641530
JRYB01000001
Betaproteobacteria
Massilia timonae [JRYB]
3672197
3672270
+
Cys
GCA
[ENA]
¡û
Identical group No.788319 (1 seq.)
>SRA1005905
SRR014589.35126
Metagenomic analysis of viruses in reclaimed water (SRP000673)
118
191
+
Cys
GCA
[SRA]
Identical group No.816025 (1 seq.)
>SRA1005801
SRR014587.171154
Metagenomic analysis of viruses in reclaimed water (SRP000673)
70
-1
-
Cys
GCA
[SRA]
Identical group No.818446 (2 seq.)
>SRA1005676
SRR014586.118424
Metagenomic analysis of viruses in reclaimed water (SRP000673)
40
113
+
Cys
GCA
[SRA]
>SRA1005701
SRR014586.153085
Metagenomic analysis of viruses in reclaimed water (SRP000673)
71
1
-
Cys
GCA
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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