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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Metagenomic analysis of viruses in reclaimed water (SRP000673)
Anticodon = GGA
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.31204 (16 seq.)
>W1710862702
LMEO01000048
Bacillota
Paenibacillus sp. Root444D2 [LMEO]
1203
1114
-
Ser
GGA
[ENA]
¡û
>W131229657
AUGY01000147
Bacillota
Paenibacillus alginolyticus DSM 5050 [AUGY]
1612
1523
-
Ser
GGA
[ENA]
¡û
>SRA1005894
SRR014589.21842
Metagenomic analysis of viruses in reclaimed water (SRP000673)
244
155
-
Ser
GGA
[SRA]
>SRA1005897
SRR014589.24780
Metagenomic analysis of viruses in reclaimed water (SRP000673)
156
245
+
Ser
GGA
[SRA]
>SRA1005918
SRR014589.44145
Metagenomic analysis of viruses in reclaimed water (SRP000673)
3
92
+
Ser
GGA
[SRA]
>SRA1005979
SRR014589.87901
Metagenomic analysis of viruses in reclaimed water (SRP000673)
224
135
-
Ser
GGA
[SRA]
>SRA1005996
SRR014589.96451
Metagenomic analysis of viruses in reclaimed water (SRP000673)
22
111
+
Ser
GGA
[SRA]
>SRA1006013
SRR014589.108206
Metagenomic analysis of viruses in reclaimed water (SRP000673)
149
238
+
Ser
GGA
[SRA]
>SRA1006021
SRR014589.117812
Metagenomic analysis of viruses in reclaimed water (SRP000673)
3
92
+
Ser
GGA
[SRA]
>SRA1006079
SRR014589.172987
Metagenomic analysis of viruses in reclaimed water (SRP000673)
203
114
-
Ser
GGA
[SRA]
>SRA1006085
SRR014589.174752
Metagenomic analysis of viruses in reclaimed water (SRP000673)
147
58
-
Ser
GGA
[SRA]
>SRA1006093
SRR014589.179993
Metagenomic analysis of viruses in reclaimed water (SRP000673)
83
172
+
Ser
GGA
[SRA]
>SRA1006126
SRR014589.229605
Metagenomic analysis of viruses in reclaimed water (SRP000673)
244
155
-
Ser
GGA
[SRA]
>W1511433108
JUGY01000095
Bacillota
Paenibacillus chondroitinus OK414 [JUGY]
468
557
+
Ser
GGA
[ENA]
¡û
>W1610725048
LMEO01000048
Bacillota
Paenibacillus sp. Root444D2 [LMEO]
1203
1114
-
Ser
GGA
[ENA]
¡û
>W1710523782
FNIF01000043
Bacillota
Paenibacillus sp. yr247 [FNIF]
19616
19525
-
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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