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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Metagenomic analysis of viruses in reclaimed water (SRP000673)
Anticodon = GGG
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.274256 (29 seq.)
>W1711075755
LSKR01002441
Actinomycetota
Corynebacterium durum [LSKR]
30516
30592
+
Pro
GGG
[ENA]
¡û
>W1711269082
LZDO01000046
Gammaproteobacteria
Moraxella osloensis [LZDO]
24506
24582
+
Pro
GGG
[ENA]
¡û
>W1711269162
LZDQ01000012
Gammaproteobacteria
Moraxella osloensis [LZDQ]
192553
192629
+
Pro
GGG
[ENA]
¡û
>W1711282091
LZMT01000009
Gammaproteobacteria
Moraxella osloensis [LZMT]
23429
23505
+
Pro
GGG
[ENA]
¡û
>W1711511524
MLCM01000008
Alphaproteobacteria
Enhydrobacter sp. H5 [MLCM]
30527
30603
+
Pro
GGG
[ENA]
¡û
>WENV180284337
OBID01030647
[OBID] metagenome; sludge
1130
1206
+
Pro
GGG
[ENA]
¢þ
>W141073524
ASSF01000388
Bacillota
Paenibacillus sophorae S27 [ASSF]
18618
18542
-
Pro
GGG
[ENA]
¡û
>WENV181193617
OEQN01001092
[OEQN] metagenome; water of meat washing
3243
3167
-
Pro
GGG
[ENA]
¢þ
>WENV181193863
OEQO01006172
[OEQO] metagenome; water of meat washing
403
327
-
Pro
GGG
[ENA]
¢þ
>WENV181199445
OERH01000538
[OERH] metagenome; water of meat washing
2795
2871
+
Pro
GGG
[ENA]
¢þ
>WENV181222753
OFDC01000192
[OFDC] hot springs metagenome; Water
46984
47060
+
Pro
GGG
[ENA]
¢þ
>C181001871
AP017381
Gammaproteobacteria
Moraxella osloensis KMC41 [AP017381]
1954189
1954265
+
Pro
GGG
-
¡û
>C181096905
CP024176
Gammaproteobacteria
Moraxella osloensis YHS [CP024176]
2003963
2004039
+
Pro
GGG
-
¡û
>C181096952
CP024180
Gammaproteobacteria
Moraxella osloensis KSH [CP024180]
1908349
1908425
+
Pro
GGG
-
¡û
>C181096999
CP024185
Gammaproteobacteria
Moraxella osloensis TT16 [CP024185]
2003855
2003931
+
Pro
GGG
-
¡û
>C181099970
CP024443
Gammaproteobacteria
Moraxella osloensis NP7 [CP024443]
1879634
1879710
+
Pro
GGG
-
¡û
>C191176302
CP040257
Gammaproteobacteria
Moraxella osloensis MOXF1 [CP040257]
1422681
1422605
-
Pro
GGG
-
¡û
>W1910871581
NCXF01000002
Gammaproteobacteria
Moraxella osloensis OG2 [NCXF]
72585
72509
-
Pro
GGG
[ENA]
¡û
>W1911543889
ORZI01000304
Gammaproteobacteria
Xanthomonas fragariae PD 2660 [ORZI]
1772
1696
-
Pro
GGG
[ENA]
¡û
>W1810190243
PKJS01000003
Gammaproteobacteria
Moraxella osloensis UMB0416 [PKJS]
157112
157188
+
Pro
GGG
[ENA]
¡û
>SRA1005761
SRR014587.16634
Metagenomic analysis of viruses in reclaimed water (SRP000673)
184
108
-
Pro
GGG
[SRA]
>W10106191
ACYI01000023
Alphaproteobacteria
Enhydrobacter aerosaccus SK60 [ACYI]
11503
11427
-
Pro
GGG
[ENA]
¡û
>W11108514
ACYI01000023
Alphaproteobacteria
Enhydrobacter aerosaccus SK60 [ACYI]
11503
11427
-
Pro
GGG
[ENA]
¡û
>W1511705944
LGSW01000002
Alphaproteobacteria
Enhydrobacter aerosaccus CGMCC9176 [LGSW]
193054
192978
-
Pro
GGG
[ENA]
¡û
>C161069209
CP014234
Gammaproteobacteria
Moraxella osloensis CCUG 350 [CP014234]
1024780
1024856
+
Pro
GGG
[Ensembl]
¡û
>W1610915060
LSKR01002441
Actinomycetota
Corynebacterium durum [LSKR]
30516
30592
+
Pro
GGG
[ENA]
¡û
>W1611029894
LZDO01000046
Gammaproteobacteria
Moraxella osloensis [LZDO]
24506
24582
+
Pro
GGG
[ENA]
¡û
>W1611029974
LZDQ01000012
Gammaproteobacteria
Moraxella osloensis [LZDQ]
192553
192629
+
Pro
GGG
[ENA]
¡û
>W1611041302
LZMT01000009
Gammaproteobacteria
Moraxella osloensis [LZMT]
23429
23505
+
Pro
GGG
[ENA]
¡û
Identical group No.391491 (6 seq.)
>W1711385062
MEDR01000037
Bacteroidota
Chryseobacterium sp. SCN 40-13 [MEDR]
27890
27814
-
Pro
GGG
[ENA]
¡û
>C181225831
LT906465
Bacteroidota
Chryseobacterium taklimakanense NCTC13490 [LT906465]
17163
17089
-
Pro
GGG
-
¡û
>C191120897
CP034171
Bacteroidota
Chryseobacterium taklimakanense H4753 [CP034171]
1550207
1550281
+
Pro
GGG
-
¡û
>C191120952
CP034173
Bacteroidota
Chryseobacterium taklimakanense F9257 [CP034173]
1248427
1248353
-
Pro
GGG
-
¡û
>SRA1005770
SRR014587.80614
Metagenomic analysis of viruses in reclaimed water (SRP000673)
119
195
+
Pro
GGG
[SRA]
>W1810758160
QPIE01000004
Bacteroidota
Chryseobacterium lacus YLOS41 [QPIE]
293431
293357
-
Pro
GGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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