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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Metagenomic analysis of viruses in reclaimed water (SRP000673)
Anticodon = GTG
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.300213 (14 seq.)
>W131218991
ATYE01000005
Bacteroidota
Asinibacterium sp. OR43 OR43 [ATYE]
36101
36175
+
His
GTG
[ENA]
¡û
>WENV181227012
OFDN01000973
[OFDN] hot springs metagenome; Water
8215
8289
+
His
GTG
[ENA]
¢þ
>WENV181839276
OGVO01000447
[OGVO] freshwater metagenome; freshwater
4541
4616
+
His
GTG
[ENA]
¢þ
>W141220180
AZXP01000001
Bacteroidota
Asinibacterium sp. OR53 OR53 [AZXP]
3553453
3553527
+
His
GTG
[ENA]
¡û
>W1810351417
PVEQ01000017
Bacteroidota
Sediminibacterium magnilacihabitans DSM 22423 [PVEQ]
36963
36889
-
His
GTG
[ENA]
¡û
>SRA1005910
SRR014589.38067
Metagenomic analysis of viruses in reclaimed water (SRP000673)
188
114
-
His
GTG
[SRA]
>SRA1005928
SRR014589.55932
Metagenomic analysis of viruses in reclaimed water (SRP000673)
183
109
-
His
GTG
[SRA]
>SRA1005951
SRR014589.69830
Metagenomic analysis of viruses in reclaimed water (SRP000673)
185
259
+
His
GTG
[SRA]
>SRA1006032
SRR014589.129372
Metagenomic analysis of viruses in reclaimed water (SRP000673)
186
260
+
His
GTG
[SRA]
>SRA1006052
SRR014589.152640
Metagenomic analysis of viruses in reclaimed water (SRP000673)
186
260
+
His
GTG
[SRA]
>SRA1006099
SRR014589.188497
Metagenomic analysis of viruses in reclaimed water (SRP000673)
126
200
+
His
GTG
[SRA]
>SRA1006112
SRR014589.203871
Metagenomic analysis of viruses in reclaimed water (SRP000673)
258
184
-
His
GTG
[SRA]
>WENV056560
AACY023259434
Marine microbial communities from Global Ocean Sampling (GOS)
975
1053
+
His
GTG
[ENA]
>W1710528879
FNNO01000019
Bacteroidota
Hydrobacter penzbergensis [FNNO]
36753
36827
+
His
GTG
[ENA]
¡û
Identical group No.483986 (2 seq.)
>WENV181858179
OGWP01004688
[OGWP] freshwater metagenome; freshwater
522
595
+
His
GTG
[ENA]
¢þ
>SRA1005944
SRR014589.65939
Metagenomic analysis of viruses in reclaimed water (SRP000673)
87
13
-
His
GTG
[SRA]
Identical group No.672190 (1 seq.)
>SRA1005515
SRR014584.126162
Metagenomic analysis of viruses in reclaimed water (SRP000673)
127
53
-
His
GTG
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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