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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Metagenomic analysis of viruses in reclaimed water (SRP000673)
Anticodon = TAA
HIT:
11 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.90513 (1 seq.)
>SRA1005485
SRR014584.69138
Metagenomic analysis of viruses in reclaimed water (SRP000673)
46
133
+
Leu
TAA
[SRA]
Identical group No.90514 (1 seq.)
>SRA1005887
SRR014589.15141
Metagenomic analysis of viruses in reclaimed water (SRP000673)
263
179
-
Leu
TAA
[SRA]
Identical group No.90516 (2 seq.)
>WENV181848263
OGVZ01003980
[OGVZ] freshwater metagenome; freshwater
1558
1473
-
Leu
TAA
[ENA]
¢þ
>SRA1006097
SRR014589.182811
Metagenomic analysis of viruses in reclaimed water (SRP000673)
97
12
-
Leu
TAA
[SRA]
Identical group No.112892 (27 seq.)
>W1711075730
LSKR01000172
Actinomycetota
Corynebacterium durum [LSKR]
97585
97499
-
Leu
TAA
[ENA]
¡û
>W1711269076
LZDO01000034
Gammaproteobacteria
Moraxella osloensis [LZDO]
16304
16390
+
Leu
TAA
[ENA]
¡û
>W1711269143
LZDQ01000001
Gammaproteobacteria
Moraxella osloensis [LZDQ]
989767
989853
+
Leu
TAA
[ENA]
¡û
>W1711282127
LZMT01000059
Gammaproteobacteria
Moraxella osloensis [LZMT]
73845
73931
+
Leu
TAA
[ENA]
¡û
>W1711511505
MLCM01000003
Alphaproteobacteria
Enhydrobacter sp. H5 [MLCM]
37898
37812
-
Leu
TAA
[ENA]
¡û
>WENV180284139
OBID01017486
[OBID] metagenome; sludge
440
354
-
Leu
TAA
[ENA]
¢þ
>W141073507
ASSF01000119
Bacillota
Paenibacillus sophorae S27 [ASSF]
12739
12825
+
Leu
TAA
[ENA]
¡û
>WENV181222977
OFDC01000902
[OFDC] hot springs metagenome; Water
2270
2184
-
Leu
TAA
[ENA]
¢þ
>C181001868
AP017381
Gammaproteobacteria
Moraxella osloensis KMC41 [AP017381]
1583019
1583105
+
Leu
TAA
-
¡û
>C181096902
CP024176
Gammaproteobacteria
Moraxella osloensis YHS [CP024176]
1621877
1621963
+
Leu
TAA
-
¡û
>C181096949
CP024180
Gammaproteobacteria
Moraxella osloensis KSH [CP024180]
1534586
1534672
+
Leu
TAA
-
¡û
>C181096996
CP024185
Gammaproteobacteria
Moraxella osloensis TT16 [CP024185]
1620942
1621028
+
Leu
TAA
-
¡û
>C181099967
CP024443
Gammaproteobacteria
Moraxella osloensis NP7 [CP024443]
1501731
1501817
+
Leu
TAA
-
¡û
>C191176310
CP040257
Gammaproteobacteria
Moraxella osloensis MOXF1 [CP040257]
326342
326256
-
Leu
TAA
-
¡û
>W1910871584
NCXF01000003
Gammaproteobacteria
Moraxella osloensis OG2 [NCXF]
197281
197367
+
Leu
TAA
[ENA]
¡û
>W1911543888
ORZI01000299
Gammaproteobacteria
Xanthomonas fragariae PD 2660 [ORZI]
22276
22190
-
Leu
TAA
[ENA]
¡û
>W1810190240
PKJS01000001
Gammaproteobacteria
Moraxella osloensis UMB0416 [PKJS]
129554
129468
-
Leu
TAA
[ENA]
¡û
>SRA1005779
SRR014587.94706
Metagenomic analysis of viruses in reclaimed water (SRP000673)
51
137
+
Leu
TAA
[SRA]
>SRA1005827
SRR014587.244676
Metagenomic analysis of viruses in reclaimed water (SRP000673)
51
137
+
Leu
TAA
[SRA]
>W10106185
ACYI01000002
Alphaproteobacteria
Enhydrobacter aerosaccus SK60 [ACYI]
45825
45739
-
Leu
TAA
[ENA]
¡û
>W11108508
ACYI01000002
Alphaproteobacteria
Enhydrobacter aerosaccus SK60 [ACYI]
45825
45739
-
Leu
TAA
[ENA]
¡û
>W1511705953
LGSW01000004
Alphaproteobacteria
Enhydrobacter aerosaccus CGMCC9176 [LGSW]
72670
72584
-
Leu
TAA
[ENA]
¡û
>C161069206
CP014234
Gammaproteobacteria
Moraxella osloensis CCUG 350 [CP014234]
653342
653428
+
Leu
TAA
[Ensembl]
¡û
>W1610915035
LSKR01000172
Actinomycetota
Corynebacterium durum [LSKR]
97585
97499
-
Leu
TAA
[ENA]
¡û
>W1611029888
LZDO01000034
Gammaproteobacteria
Moraxella osloensis [LZDO]
16304
16390
+
Leu
TAA
[ENA]
¡û
>W1611029955
LZDQ01000001
Gammaproteobacteria
Moraxella osloensis [LZDQ]
989767
989853
+
Leu
TAA
[ENA]
¡û
>W1611041338
LZMT01000059
Gammaproteobacteria
Moraxella osloensis [LZMT]
73845
73931
+
Leu
TAA
[ENA]
¡û
Identical group No.140931 (1 seq.)
>SRA1005656
SRR014586.88213
Metagenomic analysis of viruses in reclaimed water (SRP000673)
136
219
+
Leu
TAA
[SRA]
Identical group No.140932 (1 seq.)
>SRA1005717
SRR014586.193091
Metagenomic analysis of viruses in reclaimed water (SRP000673)
121
206
+
Leu
TAA
[SRA]
Identical group No.180153 (1 seq.)
>SRA1005856
SRR014588.78409
Metagenomic analysis of viruses in reclaimed water (SRP000673)
21
103
+
Leu
TAA
[SRA]
Identical group No.186050 (1 seq.)
>SRA1005556
SRR014584.183529
Metagenomic analysis of viruses in reclaimed water (SRP000673)
67
151
+
Leu
TAA
[SRA]
Identical group No.238685 (1 seq.)
>SRA1005716
SRR014586.191520
Metagenomic analysis of viruses in reclaimed water (SRP000673)
5
83
+
Leu
TAA
[SRA]
Identical group No.271897 (1 seq.)
>SRA1005851
SRR014588.56785
Metagenomic analysis of viruses in reclaimed water (SRP000673)
7
83
+
Leu
TAA
[SRA]
Identical group No.300204 (1 seq.)
>SRA1005518
SRR014584.130198
Metagenomic analysis of viruses in reclaimed water (SRP000673)
249
173
-
Leu
TAA
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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