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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Metagenomic analysis of viruses in reclaimed water (SRP000673)
Anticodon = TAT
HIT:
5 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.140959 (1 seq.)
>SRA1005648
SRR014586.62333
Metagenomic analysis of viruses in reclaimed water (SRP000673)
21
107
+
Ile
TAT
[SRA]
Identical group No.244404 (1 seq.)
>SRA1005564
SRR014584.197013
Metagenomic analysis of viruses in reclaimed water (SRP000673)
130
53
-
Ile
TAT
[SRA]
Identical group No.593557 (1 seq.)
>SRA1005657
SRR014586.89186
Metagenomic analysis of viruses in reclaimed water (SRP000673)
98
173
+
Ile
TAT
[SRA]
Identical group No.654110 (1 seq.)
>SRA1005843
SRR014588.14965
Metagenomic analysis of viruses in reclaimed water (SRP000673)
101
29
-
Ile
TAT
[SRA]
Identical group No.654114 (1 seq.)
>SRA1005861
SRR014588.127693
Metagenomic analysis of viruses in reclaimed water (SRP000673)
101
27
-
Ile
TAT
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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