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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Metagenomic characterization of a wastewater treatment plant (SRP000180)
Anticodon = CCT
HIT:
13 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.288820 (7 seq.)
>W131221544
AUAO01000001
Alphaproteobacteria
Brevundimonas aveniformis DSM 17977 [AUAO]
890614
890690
+
Arg
CCT
[ENA]
¡û
>WENV181169670
OEIV010006629
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
1580
1656
+
Arg
CCT
[ENA]
¢þ
>WENV181170423
OEIV010045638
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
411
487
+
Arg
CCT
[ENA]
¢þ
>WENV181371478
OFQV01008598
[OFQV] wastewater metagenome; WWTP Cannobio (Effluent)
864
788
-
Arg
CCT
[ENA]
¢þ
>WENV181378884
OFRC01002367
[OFRC] wastewater metagenome; Exp Tend CN 10WW
1976
1900
-
Arg
CCT
[ENA]
¢þ
>WENV181381679
OFRF01001903
[OFRF] wastewater metagenome; Exp Tend CN 50WW
2092
2168
+
Arg
CCT
[ENA]
¢þ
>SRA1001737
SRR001308.22142
Metagenomic characterization of a wastewater treatment plant (SRP000180)
82
6
-
Arg
CCT
[SRA]
Identical group No.302851 (24 seq.)
>W1711501627
MKRV01000143
Alphaproteobacteria
Alphaproteobacteria bacterium 65-37 [MKRV]
22726
22802
+
Arg
CCT
[ENA]
¡û
>WENV180020084
FTCV01001614
[FTCV] metagenome; soil
1717
1793
+
Arg
CCT
[ENA]
¢þ
>WENV180247509
OBEQ010035401
[OBEQ] groundwater metagenome; groundwater
3
79
+
Arg
CCT
[ENA]
¢þ
>WENV180284502
OBID01049657
[OBID] metagenome; sludge
933
857
-
Arg
CCT
[ENA]
¢þ
>WENV180372292
OBOI01053278
[OBOI] sediment metagenome; sediment
58
134
+
Arg
CCT
[ENA]
¢þ
>WENV181172976
OEIV011113722
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
200
124
-
Arg
CCT
[ENA]
¢þ
>WENV183663318
ORJL010273004
[ORJL] groundwater metagenome; groundwater
32975
33051
+
Arg
CCT
[ENA]
¢þ
>WENV183669802
ORJL010879018
[ORJL] groundwater metagenome; groundwater
8
84
+
Arg
CCT
[ENA]
¢þ
>WENV183673987
ORJL011336946
[ORJL] groundwater metagenome; groundwater
502
578
+
Arg
CCT
[ENA]
¢þ
>WENV183674634
ORJL011412960
[ORJL] groundwater metagenome; groundwater
1134
1058
-
Arg
CCT
[ENA]
¢þ
>WENV183691780
ORMF011817503
[ORMF] groundwater metagenome; groundwater
128
52
-
Arg
CCT
[ENA]
¢þ
>WENV170004580
AGTN01727738
[AGTN] bioreactor metagenome; poplar biomass
232
308
+
Arg
CCT
[ENA]
¢þ
>WENV170379049
CETV01083946
[CETV] marine metagenome genome assembly TARA_133_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
323
399
+
Arg
CCT
[ENA]
¢þ
>WENV170558041
CXWL01047172
[CXWL] groundwater metagenome; biofilm material
158
234
+
Arg
CCT
[ENA]
¢þ
>WENV170709706
LNFM01000606
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
94573
94497
-
Arg
CCT
[ENA]
¢þ
>WENV170710260
LNFM01001404
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
12571
12495
-
Arg
CCT
[ENA]
¢þ
>WENV170710340
LNFM01001557
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
9794
9870
+
Arg
CCT
[ENA]
¢þ
>WENV170710871
LNFM01002884
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
65087
65011
-
Arg
CCT
[ENA]
¢þ
>WENV170711573
LNFM01005896
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
803
879
+
Arg
CCT
[ENA]
¢þ
>WENV170712591
LNFM01015274
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
8452
8376
-
Arg
CCT
[ENA]
¢þ
>WENV170712854
LNFM01018864
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
252
176
-
Arg
CCT
[ENA]
¢þ
>W1910698363
MEMN01000173
Alphaproteobacteria
Alphaproteobacteria bacterium RIFCSPHIGHO2_12_FULL_66_14 [MEMN]
314
238
-
Arg
CCT
[ENA]
¡û
>SRA1001769
SRR001308.44453
Metagenomic characterization of a wastewater treatment plant (SRP000180)
276
200
-
Arg
CCT
[SRA]
>W1710600372
FUWJ01000008
Alphaproteobacteria
Enhydrobacter aerosaccus [FUWJ]
106528
106604
+
Arg
CCT
[ENA]
¡û
Identical group No.320997 (1 seq.)
>SRA1001733
SRR001308.21660
Metagenomic characterization of a wastewater treatment plant (SRP000180)
161
235
+
Arg
CCT
[SRA]
Identical group No.321025 (1 seq.)
>SRA1002004
SRR001308.179174
Metagenomic characterization of a wastewater treatment plant (SRP000180)
63
137
+
Arg
CCT
[SRA]
Identical group No.321026 (1 seq.)
>SRA1002006
SRR001308.180719
Metagenomic characterization of a wastewater treatment plant (SRP000180)
218
143
-
Arg
CCT
[SRA]
Identical group No.321061 (1 seq.)
>SRA1002321
SRR001308.374104
Metagenomic characterization of a wastewater treatment plant (SRP000180)
86
13
-
Arg
CCT
[SRA]
Identical group No.506817 (3 seq.)
>SRA1001743
SRR001308.24866
Metagenomic characterization of a wastewater treatment plant (SRP000180)
100
175
+
Arg
CCT
[SRA]
>SRA1001895
SRR001308.114034
Metagenomic characterization of a wastewater treatment plant (SRP000180)
251
176
-
Arg
CCT
[SRA]
>SRA1002027
SRR001308.193324
Metagenomic characterization of a wastewater treatment plant (SRP000180)
100
175
+
Arg
CCT
[SRA]
Identical group No.685918 (4 seq.)
>W1710894168
LNFQ01000013
Bacteroidota
Bacteroidetes bacterium OLB11 [LNFQ]
55263
55337
+
Arg
CCT
[ENA]
¡û
>WENV181169118
OEIV010000310
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
463
391
-
Arg
CCT
[ENA]
¢þ
>SRA1001794
SRR001308.58397
Metagenomic characterization of a wastewater treatment plant (SRP000180)
95
21
-
Arg
CCT
[SRA]
>W1610754434
LNFQ01000013
Bacteroidota
Bacteroidetes bacterium OLB11 [LNFQ]
55263
55337
+
Arg
CCT
[ENA]
¡û
Identical group No.685943 (1 seq.)
>SRA1002122
SRR001308.257175
Metagenomic characterization of a wastewater treatment plant (SRP000180)
172
246
+
Arg
CCT
[SRA]
Identical group No.685946 (1 seq.)
>SRA1002163
SRR001308.278592
Metagenomic characterization of a wastewater treatment plant (SRP000180)
164
90
-
Arg
CCT
[SRA]
Identical group No.685950 (1 seq.)
>SRA1002216
SRR001308.308319
Metagenomic characterization of a wastewater treatment plant (SRP000180)
137
211
+
Arg
CCT
[SRA]
Identical group No.685951 (1 seq.)
>SRA1002229
SRR001308.318181
Metagenomic characterization of a wastewater treatment plant (SRP000180)
41
113
+
Arg
CCT
[SRA]
Identical group No.685954 (1 seq.)
>SRA1002254
SRR001308.330015
Metagenomic characterization of a wastewater treatment plant (SRP000180)
215
141
-
Arg
CCT
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK