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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Metagenomic characterization of a wastewater treatment plant (SRP000180)
Anticodon = CGC
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.454508 (76 seq.)
>W1710785430
LJHV01000023
Alphaproteobacteria
Porphyrobacter sp. AAP60 [LJHV]
76674
76599
-
Ala
CGC
[ENA]
¡û
>W1710856821
LLZQ01000025
Alphaproteobacteria
Novosphingobium sp. FSW06-99 [LLZQ]
33720
33795
+
Ala
CGC
[ENA]
¡û
>W1710856914
LLZS01000009
Alphaproteobacteria
Novosphingobium fuchskuhlense [LLZS]
313979
314054
+
Ala
CGC
[ENA]
¡û
>W1710858234
LMAU01000004
Alphaproteobacteria
Tsuneonella troitsensis [LMAU]
97550
97475
-
Ala
CGC
[ENA]
¡û
>W1710869732
LMJY01000016
Alphaproteobacteria
Novosphingobium sp. Leaf2 [LMJY]
289507
289432
-
Ala
CGC
[ENA]
¡û
>W1710892819
LNED01000034
Alphaproteobacteria
Sphingomonadales bacterium Ga0077531 [LNED]
155670
155595
-
Ala
CGC
[ENA]
¡û
>W1711072900
LSIA01000136
Alphaproteobacteria
Novosphingobium sp. CCH12-A3 [LSIA]
38269
38194
-
Ala
CGC
[ENA]
¡û
>W1711220338
LXQI01000034
Alphaproteobacteria
Erythrobacter sp. ANT-B3C2 [LXQI]
109343
109418
+
Ala
CGC
[ENA]
¡û
>W1711292851
LZYB01000008
Alphaproteobacteria
Erythrobacter dokdonensis DSW-74 [LZYB]
231608
231683
+
Ala
CGC
[ENA]
¡û
>W1711503909
MKUB01000033
Alphaproteobacteria
Sphingomonadales bacterium 63-6 [MKUB]
40865
40940
+
Ala
CGC
[ENA]
¡û
>W1711705034
MSQB01000011
Alphaproteobacteria
Novosphingobium panipatense [MSQB]
101744
101669
-
Ala
CGC
[ENA]
¡û
>W1711766290
MUYG01000010
Alphaproteobacteria
Erythrobacter donghaensis [MUYG]
155445
155520
+
Ala
CGC
[ENA]
¡û
>W1711766317
MUYH01000001
Alphaproteobacteria
Erythrobacter sanguineus [MUYH]
231011
231086
+
Ala
CGC
[ENA]
¡û
>W1711766384
MUYI01000001
Alphaproteobacteria
Erythrobacter dokdonensis [MUYI]
2754379
2754304
-
Ala
CGC
[ENA]
¡û
>W1711766411
MUYJ01000002
Alphaproteobacteria
Erythrobacter tepidarius [MUYJ]
54898
54823
-
Ala
CGC
[ENA]
¡û
>W1711793262
MWLM01000022
Alphaproteobacteria
Novosphingobium sp. B 225 [MWLM]
667
742
+
Ala
CGC
[ENA]
¡û
>C171057329
CP017113
Alphaproteobacteria
Porphyrobacter sp. LM 6 [CP017113]
1362028
1362103
+
Ala
CGC
-
¡û
>W131222144
AUBA01000017
Alphaproteobacteria
Novosphingobium acidiphilum DSM 19966 [AUBA]
57354
57429
+
Ala
CGC
[ENA]
¡û
>C014680
CP000248
Alphaproteobacteria
Novosphingobium aromaticivorans DSM 12444 [CP000248]
1193066
1193141
+
Ala
CGC
[Ensembl]
¡û
>WENV180020363
FTCZ01002059
[FTCZ] metagenome; soil
21529
21604
+
Ala
CGC
[ENA]
¢þ
>WENV180037909
FVAA011999867
[FVAA] soil metagenome; Soil
73
1
-
Ala
CGC
[ENA]
¢þ
>WENV180094457
MTBK01007914
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
342
267
-
Ala
CGC
[ENA]
¢þ
>W141077937
ATHL01000019
Alphaproteobacteria
Novosphingobium lindaniclasticum LE124 [ATHL]
7399
7324
-
Ala
CGC
[ENA]
¡û
>WENV181222868
OFDC01000431
[OFDC] hot springs metagenome; Water
19531
19456
-
Ala
CGC
[ENA]
¢þ
>WENV181227089
OFDN01001690
[OFDN] hot springs metagenome; Water
4067
4142
+
Ala
CGC
[ENA]
¢þ
>WENV181234601
OFEU01000538
[OFEU] microbial mat metagenome; enrichment culture HLUCC-O from microbial mat sample; contains cyanobacterium Phormidium
13662
13587
-
Ala
CGC
[ENA]
¢þ
>W141230392
BASZ01000005
Alphaproteobacteria
Caenibius tardaugens NBRC 16725 [BASZ]
413350
413425
+
Ala
CGC
[ENA]
¡û
>WENV183726779
PJTO01000162
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment
67723
67648
-
Ala
CGC
[ENA]
¢þ
>WENV183727969
PJTP01010620
[PJTP] soil metagenome; Soil (3) enriched on wood chips: alkali lignin treatment
783
858
+
Ala
CGC
[ENA]
¢þ
>WENV183729428
PJTQ01038434
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
551
476
-
Ala
CGC
[ENA]
¢þ
>WENV183733157
PJTY01000154
[PJTY] soil metagenome; Soil enriched (2) on filter paper: alkali lignin treatment
31874
31799
-
Ala
CGC
[ENA]
¢þ
>WENV183739105
PJUE01001704
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
416
341
-
Ala
CGC
[ENA]
¢þ
>WENV183747848
PPFU01000710
[PPFU] hypolithon metagenome; Antarctic Hypolithon
16113
16038
-
Ala
CGC
[ENA]
¢þ
>WENV183749250
PPFU01142379
[PPFU] hypolithon metagenome; Antarctic Hypolithon
130
55
-
Ala
CGC
[ENA]
¢þ
>WENV170005787
AMFO01002403
[AMFO] microbial mat metagenome; iron biomat sample collected via suction sampling at the Lo'ihi Seamount, Hawai'i, in about
142
217
+
Ala
CGC
[ENA]
¢þ
>WENV170709118
LNFM01000120
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
155670
155595
-
Ala
CGC
[ENA]
¢þ
>C181069563
CP022600
Alphaproteobacteria
Porphyrobacter sp. HT-58-2 [CP022600]
1506210
1506285
+
Ala
CGC
-
¡û
>C191057037
CP028347
Alphaproteobacteria
Novosphingobium sp. THN1 [CP028347]
1983818
1983893
+
Ala
CGC
-
¡û
>C191121064
CP034179
Alphaproteobacteria
Caenibius tardaugens NBRC 16725 [CP034179]
2834782
2834857
+
Ala
CGC
-
¡û
>C191188840
CP041222
Alphaproteobacteria
Porphyrobacter sp. YT40 [CP041222]
3280946
3280871
-
Ala
CGC
-
¡û
>W09100297
AAAV03000001
Alphaproteobacteria
Novosphingobium aromaticivorans DSM 12444 [AAAV]
1370664
1370739
+
Ala
CGC
[ENA]
¡û
>W141820307
JQMU01000001
Alphaproteobacteria
Porphyrobacter sp. HL-46 [JQMU]
2364189
2364264
+
Ala
CGC
[ENA]
¡û
>W1910727952
MGVU01000194
Alphaproteobacteria
Erythrobacter sp. RIFCSPHIGHO2_12_FULL_63_10 [MGVU]
1051
976
-
Ala
CGC
[ENA]
¡û
>W1911737891
QTTB01000004
Alphaproteobacteria
Tsuneonella troitsensis KMM 6042 [QTTB]
1498030
1497955
-
Ala
CGC
[ENA]
¡û
>W1911823498
QZVQ01000002
Alphaproteobacteria
Croceibacterium ferulae SX2RGS8 [QZVQ]
239052
238977
-
Ala
CGC
[ENA]
¡û
>SRA1001889
SRR001308.111854
Metagenomic characterization of a wastewater treatment plant (SRP000180)
161
86
-
Ala
CGC
[SRA]
>W1810120408
PHSO01000010
Alphaproteobacteria
Tsuneonella flava MS1-4 [PHSO]
5695
5770
+
Ala
CGC
[ENA]
¡û
>W1810121226
PHUF01000003
Alphaproteobacteria
Novosphingobium kunmingense CGMCC 1.12274 [PHUF]
618850
618925
+
Ala
CGC
[ENA]
¡û
>W1810195449
PKRO01000003
Alphaproteobacteria
Porphyrobacter sp. TH134 [PKRO]
59203
59128
-
Ala
CGC
[ENA]
¡û
>W1810195694
PKRT01000001
Alphaproteobacteria
Novosphingobium sp. TH158 [PKRT]
1096482
1096407
-
Ala
CGC
[ENA]
¡û
>W1810597638
QGHL01000020
Alphaproteobacteria
Novosphingobium meiothermophilum SYSU G00007 [QGHL]
48677
48602
-
Ala
CGC
[ENA]
¡û
>W1510012824
BBNP01000002
Alphaproteobacteria
Novosphingobium sp. MBES04 [BBNP]
116512
116437
-
Ala
CGC
[ENA]
¡û
>W1511357027
JRVC01000023
Alphaproteobacteria
Novosphingobium subterraneum DSM 12447 [JRVC]
735
810
+
Ala
CGC
[ENA]
¡û
>W1511398035
JTDI01000004
Alphaproteobacteria
Novosphingobium malaysiense MUSC 273 [JTDI]
85421
85346
-
Ala
CGC
[ENA]
¡û
>C161093672
CP016033
Alphaproteobacteria
Erythrobacter neustonensis DSM 9434 [CP016033]
1955099
1955174
+
Ala
CGC
[Ensembl]
¡û
>W1610071173
BCTW01000004
Alphaproteobacteria
Novosphingobium lentum NBRC 107847 [BCTW]
62080
62155
+
Ala
CGC
[ENA]
¡û
>W1610077030
BCZF01000005
Alphaproteobacteria
Novosphingobium subterraneum NBRC 16086 [BCZF]
145236
145311
+
Ala
CGC
[ENA]
¡û
>W1610535201
JRQQ01000001
Alphaproteobacteria
Croceicoccus estronivorus MH-B5 [JRQQ]
79929
79854
-
Ala
CGC
[ENA]
¡û
>W1610614823
LGJH01000155
Alphaproteobacteria
Novosphingobium sp. ST904 [LGJH]
79849
79924
+
Ala
CGC
[ENA]
¡û
>W1610649236
LJHV01000023
Alphaproteobacteria
Porphyrobacter sp. AAP60 [LJHV]
76674
76599
-
Ala
CGC
[ENA]
¡û
>W1610719202
LLZQ01000025
Alphaproteobacteria
Novosphingobium sp. FSW06-99 [LLZQ]
33720
33795
+
Ala
CGC
[ENA]
¡û
>W1610719295
LLZS01000009
Alphaproteobacteria
Novosphingobium fuchskuhlense [LLZS]
313979
314054
+
Ala
CGC
[ENA]
¡û
>W1610720580
LMAU01000004
Alphaproteobacteria
Tsuneonella troitsensis [LMAU]
97550
97475
-
Ala
CGC
[ENA]
¡û
>W1610732078
LMJY01000016
Alphaproteobacteria
Novosphingobium sp. Leaf2 [LMJY]
289507
289432
-
Ala
CGC
[ENA]
¡û
>W1610753085
LNED01000034
Alphaproteobacteria
Sphingomonadales bacterium Ga0077531 [LNED]
155670
155595
-
Ala
CGC
[ENA]
¡û
>W1610912160
LSIA01000136
Alphaproteobacteria
Novosphingobium sp. CCH12-A3 [LSIA]
38269
38194
-
Ala
CGC
[ENA]
¡û
>W1611004810
LXQI01000034
Alphaproteobacteria
Erythrobacter sp. ANT-B3C2 [LXQI]
109343
109418
+
Ala
CGC
[ENA]
¡û
>W1611050067
LZYB01000008
Alphaproteobacteria
Erythrobacter dokdonensis DSW-74 [LZYB]
231608
231683
+
Ala
CGC
[ENA]
¡û
>W1710068538
BCTW01000004
Alphaproteobacteria
Novosphingobium lentum NBRC 107847 [BCTW]
62080
62155
+
Ala
CGC
[ENA]
¡û
>W1710074719
BCZF01000005
Alphaproteobacteria
Novosphingobium subterraneum NBRC 16086 [BCZF]
145236
145311
+
Ala
CGC
[ENA]
¡û
>W1710507964
FMVR01000001
Alphaproteobacteria
Novosphingobium aromaticivorans stygium [FMVR]
484914
484989
+
Ala
CGC
[ENA]
¡û
>W1710593192
FRDF01000001
Alphaproteobacteria
Erythrobacter sanguineus [FRDF]
43568
43643
+
Ala
CGC
[ENA]
¡û
>W1710605976
FWXL01000003
Alphaproteobacteria
Novosphingobium sp. B1 [FWXL]
204708
204633
-
Ala
CGC
[ENA]
¡û
>W1710609072
FXBQ01000001
Alphaproteobacteria
Maritimibacter sp. HL-12 [FXBQ]
756130
756205
+
Ala
CGC
[ENA]
¡û
>W1710637670
JRQQ01000001
Alphaproteobacteria
Croceicoccus estronivorus MH-B5 [JRQQ]
79929
79854
-
Ala
CGC
[ENA]
¡û
>W1710736069
LGJH01000155
Alphaproteobacteria
Novosphingobium sp. ST904 [LGJH]
79849
79924
+
Ala
CGC
[ENA]
¡û
Identical group No.469782 (5 seq.)
>WENV180345548
OBLN01000587
[OBLN] sediment metagenome; sediment
5962
5888
-
Ala
CGC
[ENA]
¢þ
>WENV181166219
OEIU01000001
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
332433
332508
+
Ala
CGC
[ENA]
¢þ
>WENV170649972
JRYD01001925
[JRYD] activated sludge metagenome; activated biomass in a lab-scale reactor treating industrial wastewater at 2 ppm DO
20260
20335
+
Ala
CGC
[ENA]
¢þ
>WENV170653002
JRYI01000550
[JRYI] activated sludge metagenome; activated biomass in a lab-scale reactor treating industrial wastewater at 1 ppm DO
19611
19536
-
Ala
CGC
[ENA]
¢þ
>SRA1002056
SRR001308.216395
Metagenomic characterization of a wastewater treatment plant (SRP000180)
117
192
+
Ala
CGC
[SRA]
Identical group No.506813 (2 seq.)
>SRA1001722
SRR001308.13935
Metagenomic characterization of a wastewater treatment plant (SRP000180)
139
64
-
Ala
CGC
[SRA]
>SRA1002290
SRR001308.351136
Metagenomic characterization of a wastewater treatment plant (SRP000180)
198
273
+
Ala
CGC
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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