tRNA genes clustered and arranged according to each identical group

Metagenomic characterization of a wastewater treatment plant (SRP000180)

Anticodon = CGC

HIT: 3 Group(s).
Download Sequence Representative sequence of each cluster
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Sequence ID Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species Start End Direction AA Anticodon Genome/Seq. Info. Decision
Identical group No.454508 (76 seq.)
>W1710785430 LJHV01000023 Alphaproteobacteria Porphyrobacter sp. AAP60 [LJHV] 76674 76599 - Ala CGC [ENA] ¡û
>W1710856821 LLZQ01000025 Alphaproteobacteria Novosphingobium sp. FSW06-99 [LLZQ] 33720 33795 + Ala CGC [ENA] ¡û
>W1710856914 LLZS01000009 Alphaproteobacteria Novosphingobium fuchskuhlense [LLZS] 313979 314054 + Ala CGC [ENA] ¡û
>W1710858234 LMAU01000004 Alphaproteobacteria Tsuneonella troitsensis [LMAU] 97550 97475 - Ala CGC [ENA] ¡û
>W1710869732 LMJY01000016 Alphaproteobacteria Novosphingobium sp. Leaf2 [LMJY] 289507 289432 - Ala CGC [ENA] ¡û
>W1710892819 LNED01000034 Alphaproteobacteria Sphingomonadales bacterium Ga0077531 [LNED] 155670 155595 - Ala CGC [ENA] ¡û
>W1711072900 LSIA01000136 Alphaproteobacteria Novosphingobium sp. CCH12-A3 [LSIA] 38269 38194 - Ala CGC [ENA] ¡û
>W1711220338 LXQI01000034 Alphaproteobacteria Erythrobacter sp. ANT-B3C2 [LXQI] 109343 109418 + Ala CGC [ENA] ¡û
>W1711292851 LZYB01000008 Alphaproteobacteria Erythrobacter dokdonensis DSW-74 [LZYB] 231608 231683 + Ala CGC [ENA] ¡û
>W1711503909 MKUB01000033 Alphaproteobacteria Sphingomonadales bacterium 63-6 [MKUB] 40865 40940 + Ala CGC [ENA] ¡û
>W1711705034 MSQB01000011 Alphaproteobacteria Novosphingobium panipatense [MSQB] 101744 101669 - Ala CGC [ENA] ¡û
>W1711766290 MUYG01000010 Alphaproteobacteria Erythrobacter donghaensis [MUYG] 155445 155520 + Ala CGC [ENA] ¡û
>W1711766317 MUYH01000001 Alphaproteobacteria Erythrobacter sanguineus [MUYH] 231011 231086 + Ala CGC [ENA] ¡û
>W1711766384 MUYI01000001 Alphaproteobacteria Erythrobacter dokdonensis [MUYI] 2754379 2754304 - Ala CGC [ENA] ¡û
>W1711766411 MUYJ01000002 Alphaproteobacteria Erythrobacter tepidarius [MUYJ] 54898 54823 - Ala CGC [ENA] ¡û
>W1711793262 MWLM01000022 Alphaproteobacteria Novosphingobium sp. B 225 [MWLM] 667 742 + Ala CGC [ENA] ¡û
>C171057329 CP017113 Alphaproteobacteria Porphyrobacter sp. LM 6 [CP017113] 1362028 1362103 + Ala CGC - ¡û
>W131222144 AUBA01000017 Alphaproteobacteria Novosphingobium acidiphilum DSM 19966 [AUBA] 57354 57429 + Ala CGC [ENA] ¡û
>C014680 CP000248 Alphaproteobacteria Novosphingobium aromaticivorans DSM 12444 [CP000248] 1193066 1193141 + Ala CGC [Ensembl] ¡û
>WENV180020363 FTCZ01002059 [FTCZ] metagenome; soil 21529 21604 + Ala CGC [ENA] ¢þ
>WENV180037909 FVAA011999867 [FVAA] soil metagenome; Soil 73 1 - Ala CGC [ENA] ¢þ
>WENV180094457 MTBK01007914 [MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge 342 267 - Ala CGC [ENA] ¢þ
>W141077937 ATHL01000019 Alphaproteobacteria Novosphingobium lindaniclasticum LE124 [ATHL] 7399 7324 - Ala CGC [ENA] ¡û
>WENV181222868 OFDC01000431 [OFDC] hot springs metagenome; Water 19531 19456 - Ala CGC [ENA] ¢þ
>WENV181227089 OFDN01001690 [OFDN] hot springs metagenome; Water 4067 4142 + Ala CGC [ENA] ¢þ
>WENV181234601 OFEU01000538 [OFEU] microbial mat metagenome; enrichment culture HLUCC-O from microbial mat sample; contains cyanobacterium Phormidium 13662 13587 - Ala CGC [ENA] ¢þ
>W141230392 BASZ01000005 Alphaproteobacteria Caenibius tardaugens NBRC 16725 [BASZ] 413350 413425 + Ala CGC [ENA] ¡û
>WENV183726779 PJTO01000162 [PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment 67723 67648 - Ala CGC [ENA] ¢þ
>WENV183727969 PJTP01010620 [PJTP] soil metagenome; Soil (3) enriched on wood chips: alkali lignin treatment 783 858 + Ala CGC [ENA] ¢þ
>WENV183729428 PJTQ01038434 [PJTQ] soil metagenome; Soil (3) enriched on wood chips 551 476 - Ala CGC [ENA] ¢þ
>WENV183733157 PJTY01000154 [PJTY] soil metagenome; Soil enriched (2) on filter paper: alkali lignin treatment 31874 31799 - Ala CGC [ENA] ¢þ
>WENV183739105 PJUE01001704 [PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment 416 341 - Ala CGC [ENA] ¢þ
>WENV183747848 PPFU01000710 [PPFU] hypolithon metagenome; Antarctic Hypolithon 16113 16038 - Ala CGC [ENA] ¢þ
>WENV183749250 PPFU01142379 [PPFU] hypolithon metagenome; Antarctic Hypolithon 130 55 - Ala CGC [ENA] ¢þ
>WENV170005787 AMFO01002403 [AMFO] microbial mat metagenome; iron biomat sample collected via suction sampling at the Lo'ihi Seamount, Hawai'i, in about 142 217 + Ala CGC [ENA] ¢þ
>WENV170709118 LNFM01000120 [LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant 155670 155595 - Ala CGC [ENA] ¢þ
>C181069563 CP022600 Alphaproteobacteria Porphyrobacter sp. HT-58-2 [CP022600] 1506210 1506285 + Ala CGC - ¡û
>C191057037 CP028347 Alphaproteobacteria Novosphingobium sp. THN1 [CP028347] 1983818 1983893 + Ala CGC - ¡û
>C191121064 CP034179 Alphaproteobacteria Caenibius tardaugens NBRC 16725 [CP034179] 2834782 2834857 + Ala CGC - ¡û
>C191188840 CP041222 Alphaproteobacteria Porphyrobacter sp. YT40 [CP041222] 3280946 3280871 - Ala CGC - ¡û
>W09100297 AAAV03000001 Alphaproteobacteria Novosphingobium aromaticivorans DSM 12444 [AAAV] 1370664 1370739 + Ala CGC [ENA] ¡û
>W141820307 JQMU01000001 Alphaproteobacteria Porphyrobacter sp. HL-46 [JQMU] 2364189 2364264 + Ala CGC [ENA] ¡û
>W1910727952 MGVU01000194 Alphaproteobacteria Erythrobacter sp. RIFCSPHIGHO2_12_FULL_63_10 [MGVU] 1051 976 - Ala CGC [ENA] ¡û
>W1911737891 QTTB01000004 Alphaproteobacteria Tsuneonella troitsensis KMM 6042 [QTTB] 1498030 1497955 - Ala CGC [ENA] ¡û
>W1911823498 QZVQ01000002 Alphaproteobacteria Croceibacterium ferulae SX2RGS8 [QZVQ] 239052 238977 - Ala CGC [ENA] ¡û
>SRA1001889 SRR001308.111854 Metagenomic characterization of a wastewater treatment plant (SRP000180) 161 86 - Ala CGC [SRA]
>W1810120408 PHSO01000010 Alphaproteobacteria Tsuneonella flava MS1-4 [PHSO] 5695 5770 + Ala CGC [ENA] ¡û
>W1810121226 PHUF01000003 Alphaproteobacteria Novosphingobium kunmingense CGMCC 1.12274 [PHUF] 618850 618925 + Ala CGC [ENA] ¡û
>W1810195449 PKRO01000003 Alphaproteobacteria Porphyrobacter sp. TH134 [PKRO] 59203 59128 - Ala CGC [ENA] ¡û
>W1810195694 PKRT01000001 Alphaproteobacteria Novosphingobium sp. TH158 [PKRT] 1096482 1096407 - Ala CGC [ENA] ¡û
>W1810597638 QGHL01000020 Alphaproteobacteria Novosphingobium meiothermophilum SYSU G00007 [QGHL] 48677 48602 - Ala CGC [ENA] ¡û
>W1510012824 BBNP01000002 Alphaproteobacteria Novosphingobium sp. MBES04 [BBNP] 116512 116437 - Ala CGC [ENA] ¡û
>W1511357027 JRVC01000023 Alphaproteobacteria Novosphingobium subterraneum DSM 12447 [JRVC] 735 810 + Ala CGC [ENA] ¡û
>W1511398035 JTDI01000004 Alphaproteobacteria Novosphingobium malaysiense MUSC 273 [JTDI] 85421 85346 - Ala CGC [ENA] ¡û
>C161093672 CP016033 Alphaproteobacteria Erythrobacter neustonensis DSM 9434 [CP016033] 1955099 1955174 + Ala CGC [Ensembl] ¡û
>W1610071173 BCTW01000004 Alphaproteobacteria Novosphingobium lentum NBRC 107847 [BCTW] 62080 62155 + Ala CGC [ENA] ¡û
>W1610077030 BCZF01000005 Alphaproteobacteria Novosphingobium subterraneum NBRC 16086 [BCZF] 145236 145311 + Ala CGC [ENA] ¡û
>W1610535201 JRQQ01000001 Alphaproteobacteria Croceicoccus estronivorus MH-B5 [JRQQ] 79929 79854 - Ala CGC [ENA] ¡û
>W1610614823 LGJH01000155 Alphaproteobacteria Novosphingobium sp. ST904 [LGJH] 79849 79924 + Ala CGC [ENA] ¡û
>W1610649236 LJHV01000023 Alphaproteobacteria Porphyrobacter sp. AAP60 [LJHV] 76674 76599 - Ala CGC [ENA] ¡û
>W1610719202 LLZQ01000025 Alphaproteobacteria Novosphingobium sp. FSW06-99 [LLZQ] 33720 33795 + Ala CGC [ENA] ¡û
>W1610719295 LLZS01000009 Alphaproteobacteria Novosphingobium fuchskuhlense [LLZS] 313979 314054 + Ala CGC [ENA] ¡û
>W1610720580 LMAU01000004 Alphaproteobacteria Tsuneonella troitsensis [LMAU] 97550 97475 - Ala CGC [ENA] ¡û
>W1610732078 LMJY01000016 Alphaproteobacteria Novosphingobium sp. Leaf2 [LMJY] 289507 289432 - Ala CGC [ENA] ¡û
>W1610753085 LNED01000034 Alphaproteobacteria Sphingomonadales bacterium Ga0077531 [LNED] 155670 155595 - Ala CGC [ENA] ¡û
>W1610912160 LSIA01000136 Alphaproteobacteria Novosphingobium sp. CCH12-A3 [LSIA] 38269 38194 - Ala CGC [ENA] ¡û
>W1611004810 LXQI01000034 Alphaproteobacteria Erythrobacter sp. ANT-B3C2 [LXQI] 109343 109418 + Ala CGC [ENA] ¡û
>W1611050067 LZYB01000008 Alphaproteobacteria Erythrobacter dokdonensis DSW-74 [LZYB] 231608 231683 + Ala CGC [ENA] ¡û
>W1710068538 BCTW01000004 Alphaproteobacteria Novosphingobium lentum NBRC 107847 [BCTW] 62080 62155 + Ala CGC [ENA] ¡û
>W1710074719 BCZF01000005 Alphaproteobacteria Novosphingobium subterraneum NBRC 16086 [BCZF] 145236 145311 + Ala CGC [ENA] ¡û
>W1710507964 FMVR01000001 Alphaproteobacteria Novosphingobium aromaticivorans stygium [FMVR] 484914 484989 + Ala CGC [ENA] ¡û
>W1710593192 FRDF01000001 Alphaproteobacteria Erythrobacter sanguineus [FRDF] 43568 43643 + Ala CGC [ENA] ¡û
>W1710605976 FWXL01000003 Alphaproteobacteria Novosphingobium sp. B1 [FWXL] 204708 204633 - Ala CGC [ENA] ¡û
>W1710609072 FXBQ01000001 Alphaproteobacteria Maritimibacter sp. HL-12 [FXBQ] 756130 756205 + Ala CGC [ENA] ¡û
>W1710637670 JRQQ01000001 Alphaproteobacteria Croceicoccus estronivorus MH-B5 [JRQQ] 79929 79854 - Ala CGC [ENA] ¡û
>W1710736069 LGJH01000155 Alphaproteobacteria Novosphingobium sp. ST904 [LGJH] 79849 79924 + Ala CGC [ENA] ¡û
Identical group No.469782 (5 seq.)
>WENV180345548 OBLN01000587 [OBLN] sediment metagenome; sediment 5962 5888 - Ala CGC [ENA] ¢þ
>WENV181166219 OEIU01000001 [OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex 332433 332508 + Ala CGC [ENA] ¢þ
>WENV170649972 JRYD01001925 [JRYD] activated sludge metagenome; activated biomass in a lab-scale reactor treating industrial wastewater at 2 ppm DO 20260 20335 + Ala CGC [ENA] ¢þ
>WENV170653002 JRYI01000550 [JRYI] activated sludge metagenome; activated biomass in a lab-scale reactor treating industrial wastewater at 1 ppm DO 19611 19536 - Ala CGC [ENA] ¢þ
>SRA1002056 SRR001308.216395 Metagenomic characterization of a wastewater treatment plant (SRP000180) 117 192 + Ala CGC [SRA]
Identical group No.506813 (2 seq.)
>SRA1001722 SRR001308.13935 Metagenomic characterization of a wastewater treatment plant (SRP000180) 139 64 - Ala CGC [SRA]
>SRA1002290 SRR001308.351136 Metagenomic characterization of a wastewater treatment plant (SRP000180) 198 273 + Ala CGC [SRA]
Select
Sequence ID Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species Start End Direction AA Anticodon Genome/Seq. Info. Decision
Download Sequence Representative sequence of each cluster
View ClustalW result

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