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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Metagenomic characterization of a wastewater treatment plant (SRP000180)
Anticodon = TCG
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.321044 (1 seq.)
>SRA1002155
SRR001308.275186
Metagenomic characterization of a wastewater treatment plant (SRP000180)
111
187
+
Arg
TCG
[SRA]
Identical group No.506820 (2 seq.)
>SRA1001785
SRR001308.52356
Metagenomic characterization of a wastewater treatment plant (SRP000180)
117
43
-
Arg
TCG
[SRA]
>SRA1002071
SRR001308.224726
Metagenomic characterization of a wastewater treatment plant (SRP000180)
117
43
-
Arg
TCG
[SRA]
Identical group No.794060 (3 seq.)
>WENV180030897
FTJN01387925
[FTJN] metagenome; soil
117
46
-
Arg
TCG
[ENA]
¢þ
>WENV180267137
OBEQ011819885
[OBEQ] groundwater metagenome; groundwater
310
381
+
Arg
TCG
[ENA]
¢þ
>SRA1002315
SRR001308.371110
Metagenomic characterization of a wastewater treatment plant (SRP000180)
146
75
-
Arg
TCG
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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