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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Metagenomic characterization of a wastewater treatment plant (SRP000180)
Anticodon = TGA
HIT:
12 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.22539 (1 seq.)
>SRA1001962
SRR001308.149516
Metagenomic characterization of a wastewater treatment plant (SRP000180)
82
173
+
Ser
TGA
[SRA]
Identical group No.34517 (1 seq.)
>SRA1002282
SRR001308.345751
Metagenomic characterization of a wastewater treatment plant (SRP000180)
8
98
+
Ser
TGA
[SRA]
Identical group No.52715 (4 seq.)
>SRA1001740
SRR001308.22713
Metagenomic characterization of a wastewater treatment plant (SRP000180)
60
149
+
Ser
TGA
[SRA]
>SRA1001763
SRR001308.41149
Metagenomic characterization of a wastewater treatment plant (SRP000180)
60
149
+
Ser
TGA
[SRA]
>SRA1001776
SRR001308.48894
Metagenomic characterization of a wastewater treatment plant (SRP000180)
60
149
+
Ser
TGA
[SRA]
>SRA1002141
SRR001308.271032
Metagenomic characterization of a wastewater treatment plant (SRP000180)
60
149
+
Ser
TGA
[SRA]
Identical group No.52716 (1 seq.)
>SRA1001742
SRR001308.23632
Metagenomic characterization of a wastewater treatment plant (SRP000180)
175
88
-
Ser
TGA
[SRA]
Identical group No.52721 (2 seq.)
>SRA1002014
SRR001308.184878
Metagenomic characterization of a wastewater treatment plant (SRP000180)
125
36
-
Ser
TGA
[SRA]
>SRA1003863
SRR002327.242368
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
216
127
-
Ser
TGA
[SRA]
Identical group No.52725 (1 seq.)
>SRA1002206
SRR001308.303539
Metagenomic characterization of a wastewater treatment plant (SRP000180)
161
72
-
Ser
TGA
[SRA]
Identical group No.93341 (2 seq.)
>SRA1001702
SRR001308.4697
Metagenomic characterization of a wastewater treatment plant (SRP000180)
88
175
+
Ser
TGA
[SRA]
>SRA1001730
SRR001308.20653
Metagenomic characterization of a wastewater treatment plant (SRP000180)
88
175
+
Ser
TGA
[SRA]
Identical group No.93343 (3 seq.)
>WENV180284306
OBID01027272
[OBID] metagenome; sludge
389
476
+
Ser
TGA
[ENA]
¢þ
>WENV170974497
MTKY01063648
[MTKY] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
1512
1425
-
Ser
TGA
[ENA]
¢þ
>SRA1001811
SRR001308.67000
Metagenomic characterization of a wastewater treatment plant (SRP000180)
7
94
+
Ser
TGA
[SRA]
Identical group No.93346 (2 seq.)
>WENV181170083
OEIV010022600
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
737
650
-
Ser
TGA
[ENA]
¢þ
>SRA1001955
SRR001308.147272
Metagenomic characterization of a wastewater treatment plant (SRP000180)
203
116
-
Ser
TGA
[SRA]
Identical group No.123060 (1 seq.)
>SRA1002192
SRR001308.297222
Metagenomic characterization of a wastewater treatment plant (SRP000180)
250
164
-
Ser
TGA
[SRA]
Identical group No.154890 (6 seq.)
>WENV181170431
OEIV010046210
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
1015
930
-
Ser
TGA
[ENA]
¢þ
>WENV183682534
ORMF010455230
[ORMF] groundwater metagenome; groundwater
353
438
+
Ser
TGA
[ENA]
¢þ
>WENV170989666
MWVZ01076439
[MWVZ] soil metagenome; MS6-5 sample; Antarctic (ecotone) soil
363
278
-
Ser
TGA
[ENA]
¢þ
>WENV170990534
MWWA01015048
[MWWA] soil metagenome; MS5-1 sample; Antarctic (ecotone) soil
922
837
-
Ser
TGA
[ENA]
¢þ
>WENV170991964
MWWA01394665
[MWWA] soil metagenome; MS5-1 sample; Antarctic (ecotone) soil
170
255
+
Ser
TGA
[ENA]
¢þ
>SRA1002299
SRR001308.359534
Metagenomic characterization of a wastewater treatment plant (SRP000180)
17
102
+
Ser
TGA
[SRA]
Identical group No.160413 (2 seq.)
>SRA1001796
SRR001308.58942
Metagenomic characterization of a wastewater treatment plant (SRP000180)
140
55
-
Ser
TGA
[SRA]
>SRA1002127
SRR001308.261071
Metagenomic characterization of a wastewater treatment plant (SRP000180)
140
55
-
Ser
TGA
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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