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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
Anticodon = CAC
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.244004 (5 seq.)
>WENV170647700
JREQ01002721
[JREQ] marine sediment metagenome; clay from marine sediments 31 meters below sea floor depth collected from drilling site U1352C
6804
6727
-
Val
CAC
[ENA]
¢þ
>WENV170648013
JRER01002425
[JRER] marine sediment metagenome; clay from marine sediments 136 meters below sea floor depth collected from drilling site U1352C
2983
2906
-
Val
CAC
[ENA]
¢þ
>SRA1002350
SRR001322.53428
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
83
5
-
Val
CAC
[SRA]
>SRA1002405
SRR001323.60757
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
5
82
+
Val
CAC
[SRA]
>W1610629282
LIHK01000033
Unclassified
Candidatus Bathyarchaeota archaeon BA2 [LIHK]
2567
2644
+
Val
CAC
[ENA]
¡û
Identical group No.562810 (1 seq.)
>SRA1002506
SRR001325.32625
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
3
78
+
Val
CAC
[SRA]
Identical group No.628138 (2 seq.)
>WENV170017347
BART01018214
[BART] marine sediment metagenome; marine subsurface sediment at 5.1 meters below seafloor (mbsf), off the Shimokita Peninsula
750
675
-
Val
CAC
[ENA]
¢þ
>SRA1002377
SRR001322.119123
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
41
115
+
Val
CAC
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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