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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
Anticodon = CAG
HIT:
7 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.62389 (1 seq.)
>SRA1002547
SRR001326.49637
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
99
12
-
Leu
CAG
[SRA]
Identical group No.62394 (1 seq.)
>SRA1002539
SRR001326.9427
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
1
86
+
Leu
CAG
[SRA]
Identical group No.70903 (1 seq.)
>SRA1002345
SRR001322.40511
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
91
4
-
Leu
CAG
[SRA]
Identical group No.98358 (1 seq.)
>SRA1002441
SRR001323.150892
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
16
102
+
Leu
CAG
[SRA]
Identical group No.109790 (1 seq.)
>SRA1002523
SRR001325.90629
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
106
21
-
Leu
CAG
[SRA]
Identical group No.110508 (3 seq.)
>WENV170017575
BARU01001766
[BARU] marine sediment metagenome; marine subsurface sediment at 18.6 meters below seafloor (mbsf), off the Shimokita Peninsula
379
294
-
Leu
CAG
[ENA]
¢þ
>WENV170017787
BARU01025215
[BARU] marine sediment metagenome; marine subsurface sediment at 18.6 meters below seafloor (mbsf), off the Shimokita Peninsula
19
104
+
Leu
CAG
[ENA]
¢þ
>SRA1002475
SRR001324.61072
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
22
107
+
Leu
CAG
[SRA]
Identical group No.116673 (1 seq.)
>SRA1002437
SRR001323.142412
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
35
117
+
Leu
CAG
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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