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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
Anticodon = CCC
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.669791 (10 seq.)
>WENV181409558
OGCI01000292
[OGCI] hot springs metagenome; Hot spring water
18723
18794
+
Gly
CCC
[ENA]
¢þ
>WENV183514709
OMKS01028697
[OMKS] sediment metagenome; hot spring sediment
2388
2459
+
Gly
CCC
[ENA]
¢þ
>WENV183661503
ORJL010114677
[ORJL] groundwater metagenome; groundwater
71406
71480
+
Gly
CCC
[ENA]
¢þ
>WENV183670992
ORJL011014801
[ORJL] groundwater metagenome; groundwater
422
348
-
Gly
CCC
[ENA]
¢þ
>WENV183674803
ORJL011432857
[ORJL] groundwater metagenome; groundwater
28166
28240
+
Gly
CCC
[ENA]
¢þ
>WENV183676780
ORJL011668276
[ORJL] groundwater metagenome; groundwater
3548
3474
-
Gly
CCC
[ENA]
¢þ
>WENV170017225
BART01002330
[BART] marine sediment metagenome; marine subsurface sediment at 5.1 meters below seafloor (mbsf), off the Shimokita Peninsula
125
196
+
Gly
CCC
[ENA]
¢þ
>WENV170017843
BARU01032110
[BARU] marine sediment metagenome; marine subsurface sediment at 18.6 meters below seafloor (mbsf), off the Shimokita Peninsula
659
733
+
Gly
CCC
[ENA]
¢þ
>WENV170647662
JREQ01001429
[JREQ] marine sediment metagenome; clay from marine sediments 31 meters below sea floor depth collected from drilling site U1352C
8307
8378
+
Gly
CCC
[ENA]
¢þ
>SRA1002387
SRR001323.32234
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
83
9
-
Gly
CCC
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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