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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
Anticodon = CCG
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.381061 (1 seq.)
>SRA1002482
SRR001324.72837
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
90
15
-
Arg
CCG
[SRA]
Identical group No.628131 (5 seq.)
>SRA1002331
SRR001322.4871
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
7
81
+
Arg
CCG
[SRA]
>SRA1002334
SRR001322.12730
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
7
81
+
Arg
CCG
[SRA]
>SRA1002336
SRR001322.16289
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
7
81
+
Arg
CCG
[SRA]
>SRA1002338
SRR001322.19388
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
19
93
+
Arg
CCG
[SRA]
>SRA1002344
SRR001322.38796
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
7
81
+
Arg
CCG
[SRA]
Identical group No.720176 (2 seq.)
>SRA1002495
SRR001325.12118
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
85
11
-
Arg
CCG
[SRA]
>SRA1002509
SRR001325.57985
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
85
11
-
Arg
CCG
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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