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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
Anticodon = CCG
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.242926 (1 seq.)
>SRA1002482
SRR001324.72837
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
90
15
-
Arg
CCG
[SRA]
Identical group No.313892 (19 seq.)
>W1711408816
MGNJ01000038
Chloroflexota
Chloroflexi bacterium RBG_16_50_11 [MGNJ]
6141
6213
+
Arg
CCG
[ENA]
¡û
>W1711409025
MGNQ01000025
Chloroflexota
Chloroflexi bacterium RBG_16_56_11 [MGNQ]
16134
16060
-
Arg
CCG
[ENA]
¡û
>WENV180072246
MPMA02009810
[MPMA] marine metagenome; 180 m water sample filtered on 0.2 um supor filter
556
629
+
Arg
CCG
[ENA]
¢þ
>WENV183795281
PVBE010159776
[PVBE] marine metagenome; water
1347
1420
+
Arg
CCG
[ENA]
¢þ
>WENV183804809
PVBE010960783
[PVBE] marine metagenome; water
375
447
+
Arg
CCG
[ENA]
¢þ
>WENV170016950
BARS01031949
[BARS] marine sediment metagenome; marine subsurface sediment at 0.8 meters below seafloor (mbsf), off the Shimokita Peninsula
230
303
+
Arg
CCG
[ENA]
¢þ
>WENV170017841
BARU01031622
[BARU] marine sediment metagenome; marine subsurface sediment at 18.6 meters below seafloor (mbsf), off the Shimokita Peninsula
137
210
+
Arg
CCG
[ENA]
¢þ
>WENV170018365
BARW01006186
[BARW] marine sediment metagenome; marine subsurface sediment at 107.0 meters below seafloor (mbsf), off the Shimokita Peninsula
1477
1404
-
Arg
CCG
[ENA]
¢þ
>WENV170209714
CEPV01081833
[CEPV] marine metagenome genome assembly TARA_039_MES_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
420
345
-
Arg
CCG
[ENA]
¢þ
>WENV170224749
CEQE01078625
[CEQE] marine metagenome genome assembly TARA_037_MES_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
613
541
-
Arg
CCG
[ENA]
¢þ
>WENV170647945
JRER01001593
[JRER] marine sediment metagenome; clay from marine sediments 136 meters below sea floor depth collected from drilling site U1352C
11679
11606
-
Arg
CCG
[ENA]
¢þ
>WENV170889537
MDTC01276366
[MDTC] marine metagenome; seawater
135
62
-
Arg
CCG
[ENA]
¢þ
>SRA1002331
SRR001322.4871
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
7
81
+
Arg
CCG
[SRA]
>SRA1002334
SRR001322.12730
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
7
81
+
Arg
CCG
[SRA]
>SRA1002336
SRR001322.16289
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
7
81
+
Arg
CCG
[SRA]
>SRA1002338
SRR001322.19388
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
19
93
+
Arg
CCG
[SRA]
>SRA1002344
SRR001322.38796
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
7
81
+
Arg
CCG
[SRA]
>SRA1013684
SRR023396.385457
Brazos-Trinity Basin Sediment Metagenome: IODP Site 1320 (SRP001095)
55
128
+
Arg
CCG
[SRA]
>W1730028073
MGNA01000074
Chloroflexota
Chloroflexi bacterium RBG_13_56_8b [MGNA]
2603
2530
-
Arg
CCG
[ENA]
¡û
Identical group No.426905 (3 seq.)
>WENV183800638
PVBE010604064
[PVBE] marine metagenome; water
1018
944
-
Arg
CCG
[ENA]
¢þ
>SRA1002495
SRR001325.12118
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
85
11
-
Arg
CCG
[SRA]
>SRA1002509
SRR001325.57985
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
85
11
-
Arg
CCG
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK