This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
Anticodon = CGC
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.361227 (3 seq.)
>SRA1002492
SRR001325.158
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
82
9
-
Ala
CGC
[SRA]
>SRA1002512
SRR001325.68866
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
13
86
+
Ala
CGC
[SRA]
>W1610919948
LSSB01000111
Euryarchaeota
Theionarchaea archaeon DG-70 DG-70 [LSSB]
13493
13419
-
Ala
CGC
[ENA]
¡û
Identical group No.520065 (11 seq.)
>W1711408639
MGNA01000008
Chloroflexota
Chloroflexi bacterium RBG_13_56_8b [MGNA]
4130
4055
-
Ala
CGC
[ENA]
¡û
>WENV180073485
MPMA02084077
[MPMA] marine metagenome; 180 m water sample filtered on 0.2 um supor filter
322
247
-
Ala
CGC
[ENA]
¢þ
>WENV183669252
ORJL010822226
[ORJL] groundwater metagenome; groundwater
8567
8492
-
Ala
CGC
[ENA]
¢þ
>WENV183676137
ORJL011590662
[ORJL] groundwater metagenome; groundwater
1309
1234
-
Ala
CGC
[ENA]
¢þ
>WENV183804498
PVBE010934305
[PVBE] marine metagenome; water
78
3
-
Ala
CGC
[ENA]
¢þ
>WENV170204280
CEPS01180193
[CEPS] marine metagenome genome assembly TARA_038_MES_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1056
981
-
Ala
CGC
[ENA]
¢þ
>WENV170210469
CEPV01208689
[CEPV] marine metagenome genome assembly TARA_039_MES_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1841
1766
-
Ala
CGC
[ENA]
¢þ
>WENV170215730
CEPX01173460
[CEPX] marine metagenome genome assembly TARA_037_MES_0.1-0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
373
448
+
Ala
CGC
[ENA]
¢þ
>WENV170396645
CEUC01326775
[CEUC] marine metagenome genome assembly TARA_137_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
812
887
+
Ala
CGC
[ENA]
¢þ
>WENV170875793
MDTC01028733
[MDTC] marine metagenome; seawater
2735
2810
+
Ala
CGC
[ENA]
¢þ
>SRA1002516
SRR001325.75719
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
12
87
+
Ala
CGC
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK