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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
Anticodon = CGG
HIT:
6 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.240128 (1 seq.)
>SRA1002426
SRR001323.110328
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
1
79
+
Pro
CGG
[SRA]
Identical group No.240129 (1 seq.)
>SRA1002434
SRR001323.137732
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
81
3
-
Pro
CGG
[SRA]
Identical group No.250632 (1 seq.)
>SRA1002545
SRR001326.44326
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
41
115
+
Pro
CGG
[SRA]
Identical group No.268377 (1 seq.)
>SRA1002382
SRR001323.10432
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
6
83
+
Pro
CGG
[SRA]
Identical group No.268378 (1 seq.)
>SRA1002388
SRR001323.35260
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
100
23
-
Pro
CGG
[SRA]
Identical group No.726862 (1 seq.)
>SRA1002465
SRR001324.41259
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
22
96
+
Pro
CGG
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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