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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
Anticodon = CGG
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.262291 (17 seq.)
>SRA1002375
SRR001322.116657
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
77
2
-
Pro
CGG
[SRA]
>SRA1013449
SRR023396.58716
Brazos-Trinity Basin Sediment Metagenome: IODP Site 1320 (SRP001095)
258
184
-
Pro
CGG
[SRA]
>SRA1013461
SRR023396.71548
Brazos-Trinity Basin Sediment Metagenome: IODP Site 1320 (SRP001095)
231
157
-
Pro
CGG
[SRA]
>SRA1013482
SRR023396.94519
Brazos-Trinity Basin Sediment Metagenome: IODP Site 1320 (SRP001095)
174
248
+
Pro
CGG
[SRA]
>SRA1013513
SRR023396.145479
Brazos-Trinity Basin Sediment Metagenome: IODP Site 1320 (SRP001095)
86
160
+
Pro
CGG
[SRA]
>SRA1013541
SRR023396.185410
Brazos-Trinity Basin Sediment Metagenome: IODP Site 1320 (SRP001095)
1
75
+
Pro
CGG
[SRA]
>SRA1013564
SRR023396.217752
Brazos-Trinity Basin Sediment Metagenome: IODP Site 1320 (SRP001095)
77
151
+
Pro
CGG
[SRA]
>SRA1013652
SRR023396.348599
Brazos-Trinity Basin Sediment Metagenome: IODP Site 1320 (SRP001095)
192
118
-
Pro
CGG
[SRA]
>SRA1013656
SRR023396.353820
Brazos-Trinity Basin Sediment Metagenome: IODP Site 1320 (SRP001095)
135
61
-
Pro
CGG
[SRA]
>SRA1013685
SRR023396.386240
Brazos-Trinity Basin Sediment Metagenome: IODP Site 1320 (SRP001095)
117
43
-
Pro
CGG
[SRA]
>SRA1013702
SRR023396.397217
Brazos-Trinity Basin Sediment Metagenome: IODP Site 1320 (SRP001095)
106
180
+
Pro
CGG
[SRA]
>SRA1013711
SRR023396.409537
Brazos-Trinity Basin Sediment Metagenome: IODP Site 1320 (SRP001095)
21
95
+
Pro
CGG
[SRA]
>SRA1013721
SRR023396.426330
Brazos-Trinity Basin Sediment Metagenome: IODP Site 1320 (SRP001095)
230
156
-
Pro
CGG
[SRA]
>SRA1013723
SRR023396.431454
Brazos-Trinity Basin Sediment Metagenome: IODP Site 1320 (SRP001095)
1
75
+
Pro
CGG
[SRA]
>SRA1013730
SRR023396.443156
Brazos-Trinity Basin Sediment Metagenome: IODP Site 1320 (SRP001095)
140
214
+
Pro
CGG
[SRA]
>SRA1013743
SRR023396.468761
Brazos-Trinity Basin Sediment Metagenome: IODP Site 1320 (SRP001095)
154
80
-
Pro
CGG
[SRA]
>SRA1013756
SRR023396.490163
Brazos-Trinity Basin Sediment Metagenome: IODP Site 1320 (SRP001095)
85
159
+
Pro
CGG
[SRA]
Identical group No.378784 (3 seq.)
>WENV170017692
BARU01013132
[BARU] marine sediment metagenome; marine subsurface sediment at 18.6 meters below seafloor (mbsf), off the Shimokita Peninsula
571
644
+
Pro
CGG
[ENA]
¢þ
>SRA1002346
SRR001322.46357
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
9
82
+
Pro
CGG
[SRA]
>SRA1002367
SRR001322.85266
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
9
82
+
Pro
CGG
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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